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Do not rehost third party docs of non-SciML packages #239

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Do not rehost third party docs of non-SciML packages #239

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92 changes: 0 additions & 92 deletions docs/make_aggregate.jl
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Original file line number Diff line number Diff line change
Expand Up @@ -16,63 +16,32 @@ docsmodules = [
"BaseModelica",
"ReactionNetworkImporters"],
"Symbolic Tools" => ["ModelOrderReduction", "Symbolics", "SymbolicUtils"], #="MetaTheory"=#
"Third-Party Modeling Tools" => ["MomentClosure", "Agents", "Unitful",
"ReactionMechanismSimulator",
"AlgebraicPetri"],
"Array Libraries" => ["RecursiveArrayTools", "LabelledArrays", "MultiScaleArrays"],
"Third-Party Array Libraries" => ["ComponentArrays", "StaticArrays", #="FillArrays",=#
"BandedMatrices", "BlockBandedMatrices"],
],
"Solvers" => [
"Equation Solvers" => ["LinearSolve", "NonlinearSolve", "DiffEqDocs", "Integrals", "DifferenceEquations",
"Optimization", "JumpProcesses"],
"Third-Party Equation Solvers" => [
"LowRankIntegrators",
"FractionalDiffEq",
"ManifoldDiffEq",
],
"Inverse Problems / Estimation" => [
"SciMLSensitivity", "DiffEqParamEstim", "DiffEqBayes"],
"PDE Solvers" => ["MethodOfLines", "NeuralPDE",
"NeuralOperators", "FEniCS",
"HighDimPDE", "DiffEqOperators"],
"Third-Party PDE Solvers" => [
"Trixi",
"Ferrite",
"Gridap",
"ApproxFun",
"VoronoiFVM",
],
"Advanced Solver APIs" => ["OrdinaryDiffEq", "DiffEqGPU"],
],
"Analysis" => [
"Plots and Visualization" => ["Makie"], #="PlotDocs",=#
"Parameter Analysis" => ["EasyModelAnalysis", "GlobalSensitivity", "StructuralIdentifiability"],
"Third-Party Parameter Analysis" => ["DynamicalSystems", "BifurcationKit",
"ControlSystems", "ReachabilityAnalysis"],
"Uncertainty Quantification" => ["PolyChaos", "SciMLExpectations"],
"Third-Party Uncertainty Quantification" => ["Measurements",
"MonteCarloMeasurements",
"ProbNumDiffEq", "TaylorIntegration",
"IntervalArithmetic"],
],
"Machine Learning" => [
"Function Approximation" => ["Surrogates", "ReservoirComputing"],
"Implicit Layer Deep Learning" => ["DiffEqFlux", "DeepEquilibriumNetworks"],
"Third-Party Implicit Layer Deep Learning" => ["Flux", "Lux", "SimpleChains"],
"Symbolic Learning" => ["DataDrivenDiffEq", "SymbolicNumericIntegration"],
"Third-Party Symbolic Learning" => ["SymbolicRegression"],
"Third-Party Differentiation Tooling" => ["SparseDiffTools", "FiniteDiff",
"ForwardDiff",
"Zygote", "Enzyme"],
],
"Developer Tools" => [
"Numerical Utilities" => ["ExponentialUtilities", "DiffEqNoiseProcess",
"PreallocationTools", "EllipsisNotation", "DataInterpolations",
"PoissonRandom", "QuasiMonteCarlo", "RuntimeGeneratedFunctions", "MuladdMacro", "FindFirstFunctions"],
"Third-Party Numerical Utilities" => ["FFTW", "Distributions",
"SpecialFunctions", "LoopVectorization",
"Polyester", "SparseDiffTools"], #="Tullio"=#
"High-Level Interfaces" => [
"SciMLBase",
"SciMLStructures",
Expand All @@ -82,9 +51,6 @@ docsmodules = [
"SurrogatesBase",
"CommonSolve",
],
"Third-Party Interfaces" => ["ArrayInterface", "StaticArrayInterface", "AbstractFFTs",
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why ArrayInterface and StaticArrayInterface? Those are only built here.

"GPUArrays", #= "Adapt", =#
"Tables"], #= "RecipesBase", =#
"Developer Documentation" => ["SciMLStyle", "ColPrac", "DiffEqDevDocs"],
"Extra Resources" => [
"SciMLWorkshop",
Expand All @@ -98,67 +64,11 @@ docsmodules = [
fixnames = Dict("SciMLDocs" => "The SciML Open Source Software Ecosystem",
"DiffEqDocs" => "DifferentialEquations",
"DiffEqDevDocs" => "DiffEq Developer Documentation",
"PlotDocs" => "Plots",
"SciMLBenchmarksOutput" => "The SciML Benchmarks",
"SciMLTutorialsOutput" => "Extended SciML Tutorials")
hasnojl = ["SciMLBenchmarksOutput", "SciMLTutorialsOutput", "ColPrac", "SciMLStyle", "ModelingToolkitCourse"]
usemain = ["SciMLBenchmarksOutput", "SciMLTutorialsOutput"]

external_urls = Dict("Enzyme" => "https://github.com/EnzymeAD/Enzyme.jl",
"Zygote" => "https://github.com/FluxML/Zygote.jl",
"FiniteDiff" => "https://github.com/JuliaDiff/FiniteDiff.jl",
"ForwardDiff" => "https://github.com/JuliaDiff/ForwardDiff.jl",
"SparseDiffTools" => "https://github.com/JuliaDiff/SparseDiffTools.jl",
"ManifoldDiffEq" => "https://github.com/JuliaManifolds/ManifoldDiffEq.jl",
"FractionalDiffEq" => "https://github.com/SciFracX/FractionalDiffEq.jl",
"Agents" => "https://github.com/JuliaDynamics/Agents.jl",
"LowRankIntegrators" => "https://github.com/FHoltorf/LowRankIntegrators.jl",
"MomentClosure" => "https://github.com/augustinas1/MomentClosure.jl",
"Trixi" => "https://github.com/trixi-framework/Trixi.jl",
"Gridap" => "https://github.com/gridap/Gridap.jl",
"Ferrite" => "https://github.com/Ferrite-FEM/Ferrite.jl",
"ApproxFun" => "https://github.com/JuliaApproximation/ApproxFun.jl",
"VoronoiFVM" => "https://github.com/j-fu/VoronoiFVM.jl",
"Symbolics" => "https://github.com/JuliaSymbolics/Symbolics.jl",
"SymbolicUtils" => "https://github.com/JuliaSymbolics/SymbolicUtils.jl",
"TermInterface" => "https://github.com/JuliaSymbolics/TermInterface.jl",
Comment on lines -122 to -124
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This will break the docs build.

"ComponentArrays" => "https://github.com/jonniedie/ComponentArrays.jl",
"StaticArrays" => "https://github.com/JuliaArrays/StaticArrays.jl",
"FillArrays" => "https://github.com/JuliaArrays/FillArrays.jl",
"BandedMatrices" => "https://github.com/JuliaMatrices/BandedMatrices.jl",
"BlockBandedMatrices" => "https://github.com/JuliaMatrices/BlockBandedMatrices.jl",
"PlotDocs" => "https://github.com/JuliaPlots/PlotDocs.jl",
"Makie" => "https://github.com/MakieOrg/Makie.jl",
"Measurements" => "https://github.com/JuliaPhysics/Measurements.jl",
"MonteCarloMeasurements" => "https://github.com/baggepinnen/MonteCarloMeasurements.jl",
"ProbNumDiffEq" => "https://github.com/nathanaelbosch/ProbNumDiffEq.jl",
"TaylorIntegration" => "https://github.com/PerezHz/TaylorIntegration.jl",
"IntervalArithmetic" => "https://github.com/JuliaIntervals/IntervalArithmetic.jl",
"DynamicalSystems" => "https://github.com/JuliaDynamics/DynamicalSystems.jl",
"BifurcationKit" => "https://github.com/bifurcationkit/BifurcationKitDocs.jl",
"ReachabilityAnalysis" => "https://github.com/JuliaReach/ReachabilityAnalysis.jl",
"ControlSystems" => "https://github.com/JuliaControl/ControlSystems.jl",
"Flux" => "https://github.com/FluxML/Flux.jl",
"Lux" => "https://github.com/LuxDL/Lux.jl",
"SimpleChains" => "https://github.com/PumasAI/SimpleChains.jl",
"NNlib" => "https://github.com/FluxML/NNlib.jl",
"SymbolicRegression" => "https://github.com/MilesCranmer/SymbolicRegression.jl",
"FFTW" => "https://github.com/JuliaMath/FFTW.jl",
"Distributions" => "https://github.com/JuliaStats/Distributions.jl",
"SpecialFunctions" => "https://github.com/JuliaMath/SpecialFunctions.jl",
"LoopVectorization" => "https://github.com/JuliaSIMD/LoopVectorization.jl",
"Polyester" => "https://github.com/JuliaSIMD/Polyester.jl",
"Tullio" => "https://github.com/mcabbott/Tullio.jl",
"ArrayInterface" => "https://github.com/JuliaArrays/ArrayInterface.jl",
"StaticArrayInterface" => "https://github.com/JuliaArrays/StaticArrayInterface.jl",
"AbstractFFTs" => "https://github.com/JuliaMath/AbstractFFTs.jl",
"GPUArrays" => "https://github.com/JuliaGPU/GPUArrays.jl",
"Tables" => "https://github.com/JuliaData/Tables.jl",
"Unitful" => "https://github.com/PainterQubits/Unitful.jl",
"ReactionMechanismSimulator" => "https://github.com/ReactionMechanismGenerator/ReactionMechanismSimulator.jl",
"FiniteStateProjection" => "https://github.com/kaandocal/FiniteStateProjection.jl",
"AlgebraicPetri" => "https://github.com/AlgebraicJulia/AlgebraicPetri.jl")

docs = Any[MultiDocumenter.MultiDocRef(upstream = joinpath(clonedir, "Home"),
path = "Overview",
name = "Home",
Expand All @@ -171,8 +81,6 @@ for group in docsmodules
for mod in cat[2]
url = if mod in hasnojl
"https://github.com/SciML/$mod.git"
elseif mod in keys(external_urls)
external_urls[mod]
else
"https://github.com/SciML/$mod.jl.git"
end
Expand Down