v1.0.0

What's Changed

• cli by @inaod568 in #390
• Sendev by @senthil10 in #395
• project listing bug by @inaod568 in #396
• add logger by @senthil10 in #399
• blacked by @senthil10 in #400
• Submodule delete branch by @inaod568 in #402
• refactoring by @senthil10 in #403
• bucket naem fix by @senthil10 in #404
• Project size update changed. by @inaod568 in #405
• right branch by @senthil10 in #406
• Project size update fix and other refactoring by @senthil10 in #407
• rename and login case sensitivity by @senthil10 in #408
• Handle case sensitivity by @inaod568 in #409
• Big data fail fix by @senthil10 in #429
• Some refactoring and fixes by @senthil10 in #430
• removed func.binary in delete_all by @inaod568 in #431
• Easier setup by @ewels in #445
• Env variable changes by @senthil10 in #447
• Front end package manager by @ewels in #446
• Changes in database structure by @inaod568 in #448
• Start fixing up / rewriting project file tree by @ewels in #451
• Clean up some files in the root by @ewels in #456
• Automated images to Dockerhub by @talavis in #458
• Rewrite web uploader by @ewels in #455
• Web upload - refactor staging area display. by @ewels in #459
• Use Node 14 for the ccs builder by @talavis in #468
• s3 connector - don't silently fail if there are problems by @ewels in #465
• Homepage redesign by @ewels in #471
• public id removed by @inaod568 in #474
• Animated data blobs :) by @ewels in #475
• New build order by @talavis in #495
• OIDC support for logins by @talavis in #473
• Automated linting of Python by @ErikDanielsson in #498
• Run Black by @ewels in #499
• Browser upload - warning text, cli command by @ewels in #497
• Add a 404 template by @ewels in #496
• Dark mode + footer by @ewels in #500
• Homepage tweaks by @ewels in #505
• size columns in db changed by @inaod568 in #507
• Dark tweaks by @ewels in #508
• Fix the *-light colours in dark mode by @ewels in #516
• Use offical docker actions instead (also fix build) by @talavis in #511
• Another attempt to fix the docker build by @talavis in #517
• Updated API response to return project size by @ErikDanielsson in #520
• Invoicing setup by @inaod568 in #513
• Scheduled file deletion by @inaod568 in #526
• Deactivating features by @inaod568 in #535
• added description about the public_project_id not completely working by @inaod568 in #536
• Db idchanges andinit by @inaod568 in #540
• Revert "Db idchanges andinit" by @inaod568 in #542
• Revert "Revert "Db idchanges andinit"" by @inaod568 in #543
• func.binary removed from some db queries due to errors and safespring… by @inaod568 in #545
• Update old keyword argument to fix project creation by @ErikDanielsson in #546
• Profile page by @pericsson in #523
• Replace deprecated function call with new one by @ErikDanielsson in #547
• #544 cleaned up unused imports and code pieces from two files in the api by @worukan in #553
• Logging to action file and exceptions by @inaod568 in #554
• Cleanup docker (fixes #558) by @alneberg in #559
• Config fix by @alneberg in #562
• Create codeql-analysis.yml by @inaod568 in #528
• Revert "Config fix" by @inaod568 in #563
• Minimal setup for the new authentication which supports both basic an… by @worukan in #565
• Config cleanup (by Johannes) by @inaod568 in #564
• Cleanout web WIP/Suggestion by @alneberg in #566
• Cleanup unused by @inaod568 in #567
• integrity error fixed and cleanup by @inaod568 in #568
• Increase field lengths for project title, file name and file subpath in database by @aanil in #573
• Flask command Init-dev-db by @alneberg in #572
• Revert "Flask command Init-dev-db" by @inaod568 in #576
• Factory all the way by @alneberg in #575
• Remove project auth endpoint, Hand the project to apis3connector and … by @worukan in #579
• Automatic testing with docker-compose and github actions by @alneberg in #590
• Adding instruction for running pdb inside docker to readme by @alneberg in #591
• Facility to unit by @inaod568 in #592
• Removed permissions string from the User model and its usages by @worukan in #595
• Updated test data to new model by @alneberg in #597
• Moving the schedulers to init by @MatthiasZepper in #589
• Er diagram alterations by @inaod568 in #598
• Include validators in marshmallows.py by @MatthiasZepper in #605
• Tiny readme fix by @alneberg in #607
• Fix scheduler issue with Johannes by @MatthiasZepper in #608
• Add create_proj api endpoint by @aanil in #606
• Small touches to the code related to roles. by @worukan in #614
• fixed decryption error by @inaod568 in #621
• Add tests for CreateProject by @aanil in #620
• Replace pyjwt dependency with jwcrypto and user dict-key with sub in the token by @worukan in #624
• Add senstive Column to project by @aanil in #625
• User inheritance and roles by @inaod568 in #627
• Match more than 1 level of subdirectories by @aanil in #633
• Implement Unittests for API calls (Issue #602) by @MatthiasZepper in #626
• API endpoint for listing project users by @aanil in #635
• Create API endpoints for inviting users to the DDS by @inaod568 in #571
• Username bug by @inaod568 in #640
• Encrypt the existing signed token by @worukan in #631
• Fix foreign keys and relationships by @inaod568 in #642
• Remove public_id column from File and ExpiredFile by @inaod568 in #643
• removed flaky test assert by @worukan in #649
• Improving invite email msg by @alneberg in #652
• Fix project usage by @alneberg in #655
• Fix the display of Usage and Cost columns by @MatthiasZepper in #666
• Refactor NewFile post by @inaod568 in #665
• Add option to associate user to project with add user and project create by @aanil in #664
• Update code to reflect previous refactoring by @aanil in #670
• Move marshmallows to schema folder by @inaod568 in #669
• Remove Project.size by @inaod568 in #672
• Catch raised exception during user association by @aanil in #677
• Salt length harmonisation to 32 for expired files by @aanil in #679
• Fixed the faulty GBhours calculation by @MatthiasZepper in #687
• Issue#654: Make sure time_deleted is set on all versions of a file by @MatthiasZepper in #690
• project key generation updated by @inaod568 in #692
• Encrypted token and authentication tests by @alneberg in #696
• Move verify password by @inaod568 in #704
• Use basic authentication only for the token endpoint and token authentication for the rest by @aanil in #694
• Incorporating minor code improvements suggested by CodeQL by @MatthiasZepper in #691
• Make db queries consistent by @inaod568 in #708
• removed suffix line by @inaod568 in #709
• For pytest colours by @ewels in #711
• Got flask.flash to work for 2 factor page by @alneberg in #713
• Added a custom HTML page that will be shown for already registered users by @MatthiasZepper in #714
• Fix implement 2fa by @inaod568 in #718
• Change in s3 info retrieval by @inaod568 in #716
• First step in creating a project status framework by @aanil in #717
• Password reset by @inaod568 in #722
• Add more statuses by @aanil in #723
• Fix foreign key constraints by @inaod568 in #726
• Minor updates and fixes to statuses by @aanil in #728
• project.current_status instead of just current_status by @inaod568 in #734
• Factories to create larger test datasets by @alneberg in #733
• small error, should not be not by @inaod568 in #736
• Remove expiredfiles by @inaod568 in #732
• Mock for boto3 by @alneberg in #737
• Replace boto with signedurl by @inaod568 in #727
• moved createprojectschema by @inaod568 in #739
• Request Limiter for web by @alneberg in #743
• Possible to change password using the current password by @alneberg in #744
• Deleting data and files while archiving and deleting projects by @aanil in #741
• Invite tweaks by @alneberg in #747
• added dds safespring project again, dont want to remove from database… by @inaod568 in #749
• Issue703: Delete user endpoint by @MatthiasZepper in #725
• Issue703: Change from post to delete requests in the User deletion endpoints. by @MatthiasZepper in #753
• Delete user tests with web login by @alneberg in #751
• Fix constraints tests by @alneberg in #757
• Add new endpoint to remove an associated user from a project by @aanil in #748
• Preliminary look at automatic capture of update time and updater on Project by @aanil in #758
• Fix constraints by @inaod568 in #750
• Removes expires field from Files by @aanil in #760
• Add public REST Endpoint for listing roles and permissions by @aanil in #761
• fix invite role bug by @inaod568 in #762
• Validation for username in schema same as in form by @alneberg in #763
• Remove timezone info and convert all date instances to UTC by @aanil in #765
• Return deadline if it exists when getting project status by @aanil in #766
• Retry if sending invite fails by @aanil in #768
• Issue 686 - Introduce Structured Logging by @MatthiasZepper in #771
• Issue 755: Message on login page by @MatthiasZepper in #777
• Bugfix for Issue 223 of the CLI by @MatthiasZepper in #778
• Use MAIL_DEFAULT_SENDER instead of MAIL_SENDER and MAIL_SENDER_ADDRESS by @talavis in #780
• Fix errors by @talavis in #781
• Add User activation endpoint by @aanil in #784
• Hotp mail by @alneberg in #775
• Remove pandas by @talavis in #802
• Clean up/update modules in requirements.txt by @talavis in #797
• added projectkeys table from volkans PR by @inaod568 in #803
• create new project with temporary keys etc by @inaod568 in #806
• engine dispose for tests by @alneberg in #807
• Remove unused config values and folder binds by @talavis in #808
• asymmetric user keys by @worukan in #811
• Add redis for caching by @talavis in #810
• Blocks for generating user and project keys securely by @worukan in #815
• Add config value for argon memory cost by @talavis in #824
• Slight refactoring by @inaod568 in #816
• Add encryption to mariadb by @talavis in #823
• Add back accidently removed old solution to check download eligibility by @aanil in #833
• Dump restore by @talavis in #834
• Send email to researchuser when project is released by @aanil in #814
• Add coverage check to tests by @talavis in #838
• Deleting a user deletes the associated project keys with the user by @worukan in #839
• Badges by @inaod568 in #843
• Web session valid for one hour by @inaod568 in #840
• Invite with encrypted token and test-TKEK by @alneberg in #827
• Update readme by @inaod568 in #847
• Add new line so that the token is clearly displayed by @aanil in #848
• File listing test by @talavis in #850
• Trying to add a codecov config file by @alneberg in #852
• Delete user keys too when Deleting/Archiving project by @aanil in #853
• Removing a user from a project removes the associated project keys with the user by @worukan in #854
• Session instead of cookie by @alneberg in #849
• Change in project ID by @inaod568 in #856
• Add more tests for user by @aanil in #859
• added -y by @inaod568 in #867
• create super admin by @inaod568 in #870
• Add tests for file upload by @aanil in #865
• a researcher (non-project owner) should not be able to invite someone… by @worukan in #863
• Embeds the tokens lifetime as isodate encoded timedelta by @MatthiasZepper in #790
• changelog added by @inaod568 in #871
• key generation for invite by @worukan in #855
• Moved functions from db connector by @inaod568 in #861
• Add tests for cases in upload, delete, list files by @aanil in #873
• Fix weird fail by @inaod568 in #875
• Revert invite error by @alneberg in #879
• Add docstrings by @inaod568 in #881
• Add a template for pull requests by @talavis in #894
• Key derivation by @worukan in #889
• Issue860 invites multiple projects by @MatthiasZepper in #888
• Log rotation by @talavis in #897
• Fix bugs in projects.py and add tests by @aanil in #899
• Web tests, login, change password by @worukan in #900
• ProjectAccess endpoint by @inaod568 in #885
• Reset password by @alneberg in #891
• Reactivate project access by @inaod568 in #886
• Add isactive check to reset by @inaod568 in #903
• Database migrations by @talavis in #890
• Ignore development folder by @talavis in #906
• Catch exceptions for invalid token by @talavis in #909
• Added test for flow from invite to access of project private by @alneberg in #912
• Invite researchers to projects by @inaod568 in #911
• Change non sensitive by @inaod568 in #913
• Add tests for download endpoints by @aanil in #918
• Final tests for successful invite scenarios by @alneberg in #919
• Rearrangement and clean up of the token by @worukan in #910
• Change regex to raw string by @talavis in #929
• Remove intro text, add newlines in pr template by @talavis in #930
• Add landing page after password reset by @aanil in #931
• Fix empty requests by @inaod568 in #925
• Issue924 no mail flag by @MatthiasZepper in #926
• Add endpoint for healthcheck by @talavis in #933
• create new superadmin by @inaod568 in #935
• Pre-testing version 2022-02-24 by @inaod568 in #937
• fix for creating unit admin by @inaod568 in #938
• Bug fixes and Super admin to add unit admins by @inaod568 in #940
• Add an ADR-ish (Architecture Decision Record) by @inaod568 in #942
• add link to pdf by @inaod568 in #941
• Add support for getting the correct ip when behind a reverse proxy by @talavis in #952
• Reverse proxy by @inaod568 in #953
• ADR update by @inaod568 in #960
• Relax username requirements a little by @ewels in #943
• Action log entry for uncaught exceptions. by @MatthiasZepper in #958
• Fix mailing note by @talavis in #963
• Fix command in templates to be immediately usable by @aanil in #969
• Move project creation commit from schema to the api endpoint by @talavis in #967
• Bugs fixed by @inaod568 in #971
• Increase security for session cookie by @talavis in #972
• Return role when listing project users by @aanil in #974
• Show roles when listing users by @inaod568 in #982
• Fix format of self deletion email by @aanil in #984
• Fix email message bug and fix project public_id None by @inaod568 in #981
• Custom registration form error messages by @inaod568 in #975
• After password reset: Only list projects when not superadmin by @inaod568 in #987
• Add check for if superadmin for delete email by @inaod568 in #991
• Fix formatting and error messages by @inaod568 in #989
• Simplify setting up dev environment by @talavis in #993
• Run pip install before injecting into the container by @talavis in #994
• WIP: Start bringing back the front-end by @ewels in #916
• Prettier code by @ewels in #1010
• Frontend to backend image by @talavis in #1011
• The frontend is back and there's a no-config dev setup by @inaod568 in #1009
• Correct response when email validation fails during project creation by @talavis in #1014
• Fix the dark mode switch behaviour by @ewels in #1013
• Forbid superadmin from creating project by @inaod568 in #1016
• Delete bucket by @inaod568 in #1017
• Issue1007 input validation by @MatthiasZepper in #1021
• change delete_folder regex by @inaod568 in #1019
• Fix regex for file rm/ls by @talavis in #1029
• Rewite login page to use component, nicer HTML styling. by @ewels in #1020
• Size column by @zishanmirza in #1023
• clarify in user activation by @inaod568 in #1026
• AddUser: Specific error message for unit users by @MatthiasZepper in #1039
• Improve messages, hide size from Researchers, disallow characters and fix regex by @inaod568 in #1041
• Rate limit: Error message by @zishanmirza in #1034
• Code cleanup by @talavis in #1043
• Catch KeyNotFoundError by @inaod568 in #1045
• Add new endpoint for listing unit users by @inaod568 in #1050
• make hotp invalid after password reset by @inaod568 in #1054
• Fix crash when uploading by @inaod568 in #1055
• Return info on if user has access to project by @inaod568 in #1049
• List unit users as Super Admin by @inaod568 in #1059
• Get unit info as Super Admin by @inaod568 in #1060
• Update text by @zishanmirza in #1062
• Fix deadline option by @inaod568 in #1063
• Require 2 unit admins and recommend 3 by @inaod568 in #1066
• Change list files to return int instead of str by @inaod568 in #1070
• Changed the token expiration to 7 days by @inaod568 in #1061
• Batch deleting of 1000 entries at a time by @talavis in #1067
• Password reset tracking by @inaod568 in #1058
• Update text by @zishanmirza in #1072
• update adr by @inaod568 in #1073
• Restrict super admin access by @inaod568 in #1074
• Flask command to create new unit by @inaod568 in #1076
• Add check to delete user by @inaod568 in #1075
• Catch unexpected sql errors by @inaod568 in #1077
• Validation by @zishanmirza in #1079
• add validation in schema for description by @inaod568 in #1080
• remove try except because not working by @inaod568 in #1081
• Add flask command for uploading file upload error log by @aanil in #1078
• fix bug in flask command by @inaod568 in #1085
• Remove banner on the homepage about testing by @ewels in #1087
• Change 'the user does not' to 'you do not' (tester feedback) by @inaod568 in #1088
• Add docs link to top navbar by @ewels in #1090
• Add catch of OperationalError in files.py by @inaod568 in #1089
• Catch operationalerror in s3.py by @inaod568 in #1092
• Validation by @zishanmirza in #1084
• Catch sqlalchemy.exc.OperationalError in user by @aanil in #1094
• trying to catch sqlalchemy.exc.OperationalError at project status change by @valyo in #1086
• add operational error by @inaod568 in #1093
• Add last operationalerror to dds_decorators by @inaod568 in #1095
• Better front-end styling for 2fa confirm page by @ewels in #1096
• Styled several forms - password reset etc. by @ewels in #1101
• Add Gitpod by @ewels in #1097
• Minor style improvements to 2fa email by @ewels in #1102
• Tidy user profile page by @ewels in #1103
• List-projects by @ewels in #1104
• Remove the Gitlens extension from gitpod by @ewels in #1111
• Add link to installation docs by @ewels in #1112
• Migrations without model by @alneberg in #1040
• Project Access Reset and Send Email by @zishanmirza in #1110
• Flask-Apscheduler by @inaod568 in #1109
• Bump minimist from 1.2.5 to 1.2.6 in /dds_web/static by @dependabot in #1114
• Fix bug which crashes after unanswered invite added to new project by @inaod568 in #1117
• Prep before production by @inaod568 in #1082

New Contributors

• @ewels made their first contribution in #445
• @talavis made their first contribution in #458
• @ErikDanielsson made their first contribution in #498
• @pericsson made their first contribution in #523
• @worukan made their first contribution in #553
• @alneberg made their first contribution in #559
• @aanil made their first contribution in #573
• @MatthiasZepper made their first contribution in #589
• @zishanmirza made their first contribution in #1023
• @valyo made their first contribution in #1086

Full Changelog: v0.2.0...v1.0.0