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Version 0.1.0
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ressy committed Nov 19, 2021
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5 changes: 5 additions & 0 deletions CHANGELOG.md
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## Changelog

# 0.1.0 - 2021-11-19

First beta release
18 changes: 18 additions & 0 deletions README.md
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Expand Up @@ -6,6 +6,24 @@ A command-line tool for various common Ig-Seq tasks. These are heavily biased
toward the peculiarities of our protocol and for rhesus macaque antibody
sequences. Your mileage may vary.

## Install

Install [Miniconda](https://docs.conda.io/en/latest/miniconda.html)

Install from the latest version via <https://anaconda.org/ShawHahnLab/igseq>:

conda create --name igseq -c conda-forge -c bioconda -c ShawHahnLab igseq

Or, install from the latest source here:

git clone https://github.com/ShawHahnLab/igseq.git
cd igseq
conda env update --file igseq/data/environment.yml
conda activate igseq
pip install .

## Some Instructions

The `igseq` command is organized into subcommands, grouped into two
categories: early read processing tasks (demultiplex, trim, merge, etc.), and
various convenience tools (IgBLAST this against that, what database has the
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5 changes: 3 additions & 2 deletions conda/meta.yaml
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# https://docs.conda.io/projects/conda-build/en/latest/resources/define-metadata.html
{% set version = "0.0.1" %}
{% set version = "0.1.0" %}
{% set build = "0" %}

package:
name: igseq
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git_depth: 1

build:
number: 1
number: {{ build }}
script: {{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv

requirements:
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2 changes: 1 addition & 1 deletion igseq/version.py
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See https://www.python.org/dev/peps/pep-0396/
"""

__version__ = "0.0.1"
__version__ = "0.1.0"
1 change: 1 addition & 0 deletions tools/prep-release.sh
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version=$(python -c 'from igseq.version import __version__; print(__version__)')
date=$(date +%Y-%m-%d)
echo Version: $version
echo
sed -i 's/{% set version = ".*" %}/{% set version = "'$version'" %}'/ conda/meta.yaml
sed -i "s/# dev$/# $version - $date/" CHANGELOG.md
echo conda/meta.yaml vs igseq/data/environment.yml:
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