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Update notebooks #46

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merged 2 commits into from
Nov 1, 2023
Merged

Update notebooks #46

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b864218
Update link to RIRE dataset.
zivy Nov 1, 2023
7d92494
Change in accepted pixel types of Mask filter.
zivy Nov 1, 2023
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2 changes: 1 addition & 1 deletion 05_basic_registration.ipynb
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Expand Up @@ -146,7 +146,7 @@
"source": [
"## Read images\n",
"\n",
"We first read the images, specifying the pixel type that is required for registration (Float32 or Float64) and look at them. In this notebook we use a CT and MR image from the same patient. These are part of the training data from the Retrospective Image Registration Evaluation (<a href=\"http://www.insight-journal.org/rire/\">RIRE</a>) project."
"We first read the images, specifying the pixel type that is required for registration (Float32 or Float64) and look at them. In this notebook we use a CT and MR image from the same patient. These are part of the training data from the Retrospective Image Registration Evaluation (<a href=\"https://rire.insight-journal.org/\">RIRE</a>) project."
]
},
{
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2 changes: 1 addition & 1 deletion 08_segmentation_and_shape_analysis.ipynb
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Expand Up @@ -261,7 +261,7 @@
"seeds = sitk.RelabelComponent(seeds, minimumObjectSize=15)\n",
"# Run the watershed segmentation using the distance map and seeds.\n",
"ws = sitk.MorphologicalWatershedFromMarkers(dist_img, seeds, markWatershedLine=True)\n",
"ws = sitk.Mask(ws, sitk.Cast(cleaned_thresh_img, ws.GetPixelID()))"
"ws = sitk.Mask(ws, sitk.Cast(cleaned_thresh_img, sitk.sitkUInt8))"
]
},
{
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