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AnnabelChen51 authored Mar 29, 2022
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# DFC (Deep Fiber Clustering)
__DFC: Anatomically Informed Unsupervised Deep Learning for Fast and Effective White Matter Fiber Clustering__
__Deep Fiber Clustering: Anatomically Informed Unsupervised Deep Learning for Fast and Effective White Matter Parcellation__

This code implements a deep learning method for white matter fiber clustering using diffusion MRI data, as described in the following paper:

Yuqian Chen, Chaoyi Zhang, Yang Song, Tengfei Xue, Nikos Makris, Yogesh Rathi, Weidong Cai, Fan Zhang, Lauren J. O’Donnell.
DFC: Anatomically Informed Unsupervised Deep Learning for Fast and Effective White Matter Fiber Clustering. (In submission soon)
Deep Fiber Clustering: Anatomically Informed Unsupervised Deep Learning for Fast and Effective White Matter Parcellation. (MICCAI 2021, travel award)
![figure1](https://user-images.githubusercontent.com/59594831/160573732-fa1881b2-780d-41bb-86b6-c4eb6cae801d.png)

## Installation
The code has been tested with Python 3.7, Pytorch 1.7.1, CUDA 10.1 on Ubuntu 18.04.
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To evaluate the model with testing data:
```
python test.py -indir <path of testing data>
python test.py -indir <path of testing data> -modeldir <path of trainign model>
```
Effective fiber clustering was achieved with the proposed method. Below is a visualization of the obtained clusters.

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