adding genomad version 1.9.0

[erinyoung]

There's a new version of genomad! Actually, there are a few versions (including one that came out WHILE I was updating the files).

According to the release notes

There is a new version of mmseqs (17-b804f) but not aragorn, so I've updated the tool-specific readme.

For this PR, I copied the files from 1.8.1 and changes the version args for mmseqs and genomad. I changed the as to AS and moved the CMD line to json format.

The full diff:

$ diff build-files/genomad/1.8.1/Dockerfile build-files/genomad/1.11.0/Dockerfile 
2c2
< ARG GENOMAD_VER="1.8.1"
---
> ARG GENOMAD_VER="1.11.0"
4c4
< ARG MMSEQS2_VER="15-6f452"
---
> ARG MMSEQS2_VER="17-b804f"
6c6
< FROM ubuntu:jammy as builder
---
> FROM ubuntu:jammy AS builder
22c22
< FROM ubuntu:jammy as app
---
> FROM ubuntu:jammy AS app
62c62
< RUN genomad download-database . 
---
> RUN genomad download-database .
65c65
< CMD genomad --help
---
> CMD ["genomad", "--help"]
70c70
< FROM app as test
---
> FROM app AS test

Pull Request (PR) checklist:

• Include a description of what is in this pull request in this message.
• The dockerfile successfully builds to a test target for the user creating the PR. (i.e. docker build --tag samtools:1.15test --target test docker-builds/build-files/samtools/1.15 )
• Directory structure as name of the tool in lower case with special characters removed with a subdirectory of the version number in build-files (i.e. docker-builds/build-files/spades/3.12.0/Dockerfile)
  • (optional) All test files are located in same directory as the Dockerfile (i.e. build-files/shigatyper/2.0.1/test.sh)
• Create a simple container-specific README.md in the same directory as the Dockerfile (i.e. docker-builds/build-files/spades/3.12.0/README.md)
  • If this README is longer than 30 lines, there is an explanation as to why more detail was needed
• Dockerfile includes the recommended LABELS
• Main README.md has been updated to include the tool and/or version of the dockerfile(s) in this PR
• Program_Licenses.md contains the tool(s) used in this PR and has been updated for any missing