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There's a new version of gfastats!
According to the release notes, this version fixes a bug introduced in 1.3.8 (which we sort of skipped in our repo).
Other notes:
--seq-report
is no longer a supported flag. I imagine this update will break any workflows that use it. Due to this change, I had to adjust the test to use the--segment-report
flag instead.I copied the files from 1.3.7, updated the version arg, changed the CMD line to json format, and updated the test to reflect current usage.
Pull Request (PR) checklist:
docker build --tag samtools:1.15test --target test docker-builds/build-files/samtools/1.15
)docker-builds/build-files/spades/3.12.0/Dockerfile
)build-files/shigatyper/2.0.1/test.sh
)docker-builds/build-files/spades/3.12.0/README.md
)