More gff3 parser import issues.

This should resolve two reported tool issues from jgill. More work towards #1. sorta.
TAMU-CPT · Sep 3, 2023 · 03123e9 · 03123e9
1 parent 3a6590b
commit 03123e9
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Showing 3 changed files with 15 additions and 3 deletions.
diff --git a/cpt_fix_sixpack/gff3_fix_sixpack.xml b/cpt_fix_sixpack/gff3_fix_sixpack.xml
@@ -4,7 +4,11 @@
     <import>macros.xml</import>
     <import>cpt-macros.xml</import>
   </macros>
-  <expand macro="requirements"/>
+  <expand macro="requirements">
+    <requirement type="package" version="3.9.16">python</requirement>
+    <requirement type="package" version="1.2.2">cpt_gffparser</requirement>
+    <requirement type="package" version="1.81">biopython</requirement>
+  </expand>
   <command detect_errors="aggressive"><![CDATA[
 '$__tool_directory__/gff3_fix_sixpack.py'
 @INPUT_GFF@

diff --git a/cpt_req_phage_start/gff3_require_phage_start.xml b/cpt_req_phage_start/gff3_require_phage_start.xml
@@ -4,7 +4,11 @@
     <import>macros.xml</import>
     <import>cpt-macros.xml</import>
   </macros>
-  <expand macro="requirements"/>
+  <expand macro="requirements">
+    <requirement type="package" version="3.9.16">python</requirement>
+    <requirement type="package" version="1.2.2">cpt_gffparser</requirement>
+    <requirement type="package" version="1.81">biopython</requirement>
+  </expand>
   <command detect_errors="aggressive"><![CDATA[
 @GENOME_SELECTOR_PRE@
 

diff --git a/gff3/gff3_fix_sixpack.xml b/gff3/gff3_fix_sixpack.xml
@@ -4,7 +4,11 @@
     <import>macros.xml</import>
     <import>cpt-macros.xml</import>
   </macros>
-  <expand macro="requirements"/>
+  <expand macro="requirements">
+    <requirement type="package" version="3.9.16">python</requirement>
+    <requirement type="package" version="1.2.2">cpt_gffparser</requirement>
+    <requirement type="package" version="1.81">biopython</requirement>
+  </expand>
   <command detect_errors="aggressive"><![CDATA[
 '$__tool_directory__/gff3_fix_sixpack.py'
 @INPUT_GFF@