GitHub - Tectonius/02-251-final-project: 02-251 final project

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Name		Name	Last commit message	Last commit date
Latest commit History 57 Commits
.idea		.idea
PCA Seqs		PCA Seqs
Sup Refs		Sup Refs
__pycache__		__pycache__
sup		sup
1a0cA_1a0dA.dnd		1a0cA_1a0dA.dnd
1a0cA_1a0dA.fasta		1a0cA_1a0dA.fasta
1a0cA_1a0dA_ref_align.fasta		1a0cA_1a0dA_ref_align.fasta
1aab_ref1.dnd		1aab_ref1.dnd
1aab_ref1.fasta		1aab_ref1.fasta
1aab_ref1_final.aln		1aab_ref1_final.aln
1aab_ref1_log.txt		1aab_ref1_log.txt
1aab_ref1_ref_align.fasta		1aab_ref1_ref_align.fasta
2022_03_07_A.fasta		2022_03_07_A.fasta
2022_03_07_first_3.dnd		2022_03_07_first_3.dnd
2022_03_07_first_3.fasta		2022_03_07_first_3.fasta
BB11001.dnd		BB11001.dnd
BB11001.fasta		BB11001.fasta
BB11001_final.aln		BB11001_final.aln
BB11001_log.txt		BB11001_log.txt
BB11001_ref_align.fasta		BB11001_ref_align.fasta
Characteristicframework.py		Characteristicframework.py
compare_characteristics.py		compare_characteristics.py
extracted_data.pkl		extracted_data.pkl
f_scoring.py		f_scoring.py
filtered_extracted_data.pkl		filtered_extracted_data.pkl
final_extracted_data.pkl		final_extracted_data.pkl
final_wrapper.py		final_wrapper.py
log_2022_03_07_first_3.txt		log_2022_03_07_first_3.txt
optimized_first_3.fasta		optimized_first_3.fasta
optimized_first_3_aligned.aln		optimized_first_3_aligned.aln
output_t.py		output_t.py
output_visualization.py		output_visualization.py
ox_8_ref_align.fasta		ox_8_ref_align.fasta
ox_8_seqs.dnd		ox_8_seqs.dnd
ox_8_seqs.fasta		ox_8_seqs.fasta
ox_alignment_log.txt		ox_alignment_log.txt
ox_final_alignment.aln		ox_final_alignment.aln
pca_t.py		pca_t.py
pso.py		pso.py
ref_sp.py		ref_sp.py
report.log		report.log
run_clustal.py		run_clustal.py
scored_pairs.pkl		scored_pairs.pkl
seq_file_reader.py		seq_file_reader.py
sup_002		sup_002
sup_002.dnd		sup_002.dnd
sup_002.fasta		sup_002.fasta
sup_002_final.aln		sup_002_final.aln
sup_002_log.txt		sup_002_log.txt
sup_002_ref_align.fasta		sup_002_ref_align.fasta