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Make TPL-to-TPL dependencies optional (#557)
Disabling the upstream TPL HDF5 was disabling the TPL Netcdf and that broke several customer's Trilinos configure scripts. The issue is, that we can't treat TPL-to-TPL dependencies as required for cases like this. I also updated some documentation to make this more clear. In the future, we may need to expand TPL intra-dependencies to support optional and required dependencies because there are cases where you would like the behavior of required dependencies for some TPL relationships.
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