Refactor cancer modules to reduce code duplication#1426

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willGraham01 wants to merge 21 commits intomasterfrom wgraham/refactor-cancer-modules

+601-620

Commits on Jul 17, 2024

Create initialise_simulation_hook and move consumable item code lookup into the framework
willGraham01
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Catch missed linear_model references
willGraham01
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Refactor initialise_population df column setting in cancer modules
willGraham01
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Refactor on_birth method, which is programmatically identical for all cancers
willGraham01
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Remove on_hsi_alert in subclasses (they all just pass this method)
willGraham01
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Merge branch 'master' into wgraham/refactor-cancer-modules
willGraham01
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Fix analysis/hsi_events module to HSI_Event mappings (importing _BaseCancer results in the module thinking 2 classes are defined)
willGraham01
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Linting pass
willGraham01
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Add a docstring for _BaseCancer
willGraham01
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Refactor the scheduling of the main polling and logging events
willGraham01
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Tidy repeated comments into base class docstring, add typehints
willGraham01
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Rename new file to be consistent with class that's defined inside
willGraham01
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Move cancer modules into the subfolder, update refs across all files
willGraham01
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Commits on Jul 18, 2024