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@UMCUGenetics

UMCU Genetics

Repository for genetics code

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  1. RNASeq-NF RNASeq-NF Public

    RNASeq-NF is an NGS analysis pipeline for RNA expression quantification.

    Nextflow 8 8

  2. NF-IAP NF-IAP Public

    Illumina Analysis Pipeline in Nextflow

    Nextflow 3 5

  3. NextflowModules NextflowModules Public

    UMCU Genetics Nextflow modules

    Nextflow 28 10

Repositories

Showing 10 of 150 repositories
  • CustomModules Public
    UMCUGenetics/CustomModules’s past year of commit activity
    R 2 MIT 0 0 3 Updated Apr 25, 2025
  • clarity_epp Public

    Clarity LIMS epp scripts

    UMCUGenetics/clarity_epp’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Apr 25, 2025
  • rsync_to_rdisc Public

    Daemon to rsync data from HPC to bgarray

    UMCUGenetics/rsync_to_rdisc’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Apr 25, 2025
  • DIMS Public

    Direct Infusion Mass Spectrometry pipeline

    UMCUGenetics/DIMS’s past year of commit activity
    Nextflow 2 MIT 2 11 2 Updated Apr 25, 2025
  • ood_rstudio Public

    App to start Rstudio server on HPC node via OpenOndemand

    UMCUGenetics/ood_rstudio’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Apr 24, 2025
  • USEQ_tools Public

    Utility scripts to work with Genologics Clarity LIMS

    UMCUGenetics/USEQ_tools’s past year of commit activity
    Python 2 MIT 0 0 2 Updated Apr 24, 2025
  • GIABEval Public

    Genome-in-a-bottle evaluation tool to determine statistics

    UMCUGenetics/GIABEval’s past year of commit activity
    Nextflow 2 MIT 0 0 0 Updated Apr 18, 2025
  • Epi2Me_wf-human-variation Public Forked from epi2me-labs/wf-human-variation
    UMCUGenetics/Epi2Me_wf-human-variation’s past year of commit activity
    Nextflow 0 60 0 1 Updated Apr 14, 2025
  • requant Public
    UMCUGenetics/requant’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 8, 2025
  • Dx_resources Public

    Resources used in diagnostics pipelines

    UMCUGenetics/Dx_resources’s past year of commit activity
    Python 3 MIT 0 15 1 Updated Apr 2, 2025
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