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@UMCUGenetics

UMCU Genetics

Repository for genetics code

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  1. RNASeq-NF RNASeq-NF Public

    RNASeq-NF is an NGS analysis pipeline for RNA expression quantification.

    Nextflow 8 8

  2. NF-IAP NF-IAP Public

    Illumina Analysis Pipeline in Nextflow

    Nextflow 3 5

  3. NextflowModules NextflowModules Public

    UMCU Genetics Nextflow modules

    Nextflow 27 10

Repositories

Showing 10 of 146 repositories
  • clarity_epp Public

    Clarity LIMS epp scripts

    UMCUGenetics/clarity_epp’s past year of commit activity
    Python 1 MIT 0 0 1 Updated Feb 7, 2025
  • rsync_to_rdisc Public

    Daemon to rsync data from HPC to bgarray

    UMCUGenetics/rsync_to_rdisc’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Feb 7, 2025
  • DxNextflowRNA Public
    UMCUGenetics/DxNextflowRNA’s past year of commit activity
    R 0 0 0 2 Updated Feb 7, 2025
  • aptaflow_useq Public Forked from hovercat/aptaflow

    Modified apaflow pipeline for useq output and umcu hpc

    UMCUGenetics/aptaflow_useq’s past year of commit activity
    Nextflow 0 3 0 0 Updated Feb 4, 2025
  • pypgx Public Forked from sbslee/pypgx

    A Python package for pharmacogenomics (PGx) research

    UMCUGenetics/pypgx’s past year of commit activity
    Python 0 MIT 16 0 0 Updated Feb 3, 2025
  • DIMS Public

    Direct Infusion Mass Spectrometry pipeline

    UMCUGenetics/DIMS’s past year of commit activity
    Nextflow 2 MIT 2 11 1 Updated Feb 3, 2025
  • CustomModules Public
    UMCUGenetics/CustomModules’s past year of commit activity
    R 1 MIT 0 0 2 Updated Feb 3, 2025
  • ManuscriptSMNGeneConversion Public

    Scripts and files related to the SMN gene conversion manuscript

    UMCUGenetics/ManuscriptSMNGeneConversion’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 31, 2025
  • HapSMA Public

    Nextflow Oxford Nanopore Technologies workflow for SMA dataprocessing

    UMCUGenetics/HapSMA’s past year of commit activity
    Nextflow 0 MIT 0 1 0 Updated Jan 31, 2025
  • ExonCov Public

    ExonCov: Exon coverage statistics from BAM files

    UMCUGenetics/ExonCov’s past year of commit activity
    Python 4 MIT 3 4 4 Updated Jan 30, 2025
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