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Update Bunya-User-Guide.md
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m2hankel authored Jul 29, 2024
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* [Connecting to Bunya](https://github.com/UQ-RCC/hpc-docs/blob/main/guides/Bunya-User-Guide.md#connecting)
* [Transferring files](https://github.com/UQ-RCC/hpc-docs/blob/main/guides/Bunya-User-Guide.md#file-transfer)
* [Software on Bunya](https://github.com/UQ-RCC/hpc-docs/blob/main/guides/Bunya-User-Guide.md#software)
* [Conda on Bunya](conda-environment.md)
* [Using software containers on Bunya](https://github.com/UQ-RCC/hpc-docs/blob/main/guides/Bunya-User-Guide.md#using-software-containers-on-bunya)
* [Fair Share on Bunya](FairShare.md)
* [Interactive batch jobs](https://github.com/UQ-RCC/hpc-docs/blob/main/guides/Bunya-User-Guide.md#interactive-jobs)
* [SLURM scripts and examples](https://github.com/UQ-RCC/hpc-docs/blob/main/guides/Bunya-User-Guide.md#slurm-scripts)
* [How to check jobs in SLURM](https://github.com/UQ-RCC/hpc-docs/blob/main/guides/Bunya-User-Guide.md#how-to-manage-your-jobs-and-cluster-activity-in-slurm)
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**Note: R packages that were built for Tinaroo, or for a different version of R will NOT work properly or at all on Bunya.**
We recommend that you delete all packages built with/for/on Tinaroo and FlashLite and run `install.packages()` again.

#### Building Python environments ####
#### Building Python and Conda environments ####

Similary to information about for R packages. Python environments built with/for/on Tinaroo and FlashLite need to be reinstalled on Bunya.

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You cannot build a container on Bunya directly from a Dockerfile prescription. Instead, you will need to use the docker software to create a container image and upload it to a suitable repository. Then you will be able to "pull" a copy of it and it will be converted to apptainer format.

## Fair Share

Bunya employes [fair share](FairShare.md) to ensure that each user is able to use Bunya resources.

## Interactive jobs

### Do not run on the login nodes
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