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@USCbiostats

USC Division of Biostatistics

Organization for USC Division of Biostatistics

Welcome to the Github page for the Division of Biostatistics at USC!

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You can find the Division of Biostatistics's webpage here.



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Many members of the division also participate in a Program Project, "Integrative Methods of Analysis for Genetic Epidemiology" (IMAGE), as part of our Center for Statistical Genomics. More details of this can be found here.



This github organization is used to warehouse and develop software we are working on. You can find that software by clicking on the "Repositories" tab above. Examples include:

cit: Causal Inference Testing;
fdrci: Permutation-Based FDR Point and Confidence Interval Estimation;
LUCIDus: Latent and Unknown Cluster Analysis using Integrated Data;
xtune: Lasso and Ridge Regression with differential penalization based on prior knowledge;
AnnoQ: An integrated and interactive platform for large-scale genetic variant annotation.

In addition, we also use this organization to warehouse other information, such as guidelines for software development and materials from previous seminars, etc. For example, we run a seminar series known as the "Happy Scientist", to ensure that we are happy, not sad. You can find these here.

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LA's BeST 2024

One of our educational initiatives is LA's Biostatistics Education Summer Training program at USC (LA's BEST@USC). In this annual summer program, students receive formal training in biostatistics and data science and meet experts in epidemiology, molecular biology, cancer, and clinical research with opportunities to work on real data sets. An overview of the program can be found here. You can access the official class website here.



For general guidelines on the writing of Software and packages, particularly in R, you should go to our Software Development page. There you will find guidelines on "Coding Standards", How to use the Biostats "Bioghost" server, and a variety of topics in "High-Performance Computing".
The software development landing page is here.

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  1. software-dev software-dev Public

    Coding Standards for the USC Biostats group

    HTML 35 7

  2. GxEScanR GxEScanR Public

    R version of GxEScan

    R 7 1

  3. AnnoQ AnnoQ Public archive

    Documents For AnnoQ

    1

  4. xtune xtune Public

    Forked from ChubingZeng/xtune

    An R 📦 for Lasso and Ridge Regression with differential penalization based on prior knowledge ✌️

    R 2

  5. rbootcamp rbootcamp Public

    R boot camp: Scientific Computing

    HTML 29 16

  6. LUCIDus LUCIDus Public

    the new version of LUCID

    R 7 5

Repositories

Showing 10 of 129 repositories
  • PM566-bots Public
    USCbiostats/PM566-bots’s past year of commit activity
    0 1 0 0 Updated Dec 16, 2024
  • USCbiostats/geese-simulations’s past year of commit activity
    R 0 0 0 0 Updated Dec 13, 2024
  • USCbiostats/annoq-database’s past year of commit activity
    Python 0 0 2 0 Updated Dec 12, 2024
  • PM516 Public
    USCbiostats/PM516’s past year of commit activity
    0 0 0 0 Updated Dec 11, 2024
  • PM566 Public

    USC's Introduction to Health Data Science

    USCbiostats/PM566’s past year of commit activity
    HTML 13 27 15 0 Updated Dec 9, 2024
  • annoq-api-v2 Public
    USCbiostats/annoq-api-v2’s past year of commit activity
    Jupyter Notebook 0 1 3 0 Updated Dec 5, 2024
  • aphylo Public

    Statistical inference of genetic functions in phylogenetic trees

    USCbiostats/aphylo’s past year of commit activity
    R 6 2 8 1 Updated Dec 3, 2024
  • software-dev Public

    Coding Standards for the USC Biostats group

    USCbiostats/software-dev’s past year of commit activity
    HTML 35 7 2 0 Updated Nov 21, 2024
  • partition Public

    A fast and flexible framework for data reduction in R

    USCbiostats/partition’s past year of commit activity
    HTML 35 4 2 0 Updated Nov 10, 2024
  • annoq-site Public
    USCbiostats/annoq-site’s past year of commit activity
    TypeScript 0 2 14 1 Updated Nov 6, 2024

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