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get_data_from_api.sh
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get_data_from_api.sh
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curl 'http://annoq.org/api/annoq-annotations-v2/_search' -H 'Accept: */*' -H 'Accept-Language: en-GB,en-US;q=0.9,en;q=0.8' -H 'Connection: keep-alive' -H 'Cookie: _ga=GA1.1.477605867.1691795845; _ga_ZRDY68GK00=GS1.1.1712360539.93.1.1712360549.0.0.0' -H 'Origin: http://annoq.org' -H 'Referer: http://annoq.org/search' -H 'User-Agent: Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/123.0.0.0 Safari/537.36' -H 'content-type: application/json' --data-raw '{"_source":["chr","pos","ref","alt","rs_dbSNP151","VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"],"aggs":{"chr":{"filter":{"exists":{"field":"chr"}}},"pos_min":{"min":{"field":"pos"}},"pos_max":{"max":{"field":"pos"}},"pos":{"filter":{"exists":{"field":"pos"}}},"ref":{"filter":{"exists":{"field":"ref"}}},"alt":{"filter":{"exists":{"field":"alt"}}},"rs_dbSNP151":{"filter":{"exists":{"field":"rs_dbSNP151"}}},"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id":{"filter":{"exists":{"field":"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"}}}},"query":{"bool":{"filter":[{"term":{"chr":1}},{"range":{"pos":{"gte":1,"lte":500000}}},{"exists":{"field":"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"}}],"must":[]}},"from":100,"size":50}' --insecure -o sample_data/downloaded_json_files/chr1.json
curl 'http://annoq.org/api/annoq-annotations-v2/_search' -H 'Accept: */*' -H 'Accept-Language: en-GB,en-US;q=0.9,en;q=0.8' -H 'Connection: keep-alive' -H 'Cookie: _ga=GA1.1.477605867.1691795845; _ga_ZRDY68GK00=GS1.1.1712360539.93.1.1712360549.0.0.0' -H 'Origin: http://annoq.org' -H 'Referer: http://annoq.org/search' -H 'User-Agent: Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/123.0.0.0 Safari/537.36' -H 'content-type: application/json' --data-raw '{"_source":["chr","pos","ref","alt","rs_dbSNP151","VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"],"aggs":{"chr":{"filter":{"exists":{"field":"chr"}}},"pos_min":{"min":{"field":"pos"}},"pos_max":{"max":{"field":"pos"}},"pos":{"filter":{"exists":{"field":"pos"}}},"ref":{"filter":{"exists":{"field":"ref"}}},"alt":{"filter":{"exists":{"field":"alt"}}},"rs_dbSNP151":{"filter":{"exists":{"field":"rs_dbSNP151"}}},"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id":{"filter":{"exists":{"field":"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"}}}},"query":{"bool":{"filter":[{"term":{"chr":2}},{"range":{"pos":{"gte":1,"lte":500000}}},{"exists":{"field":"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"}}],"must":[]}},"from":100,"size":50}' --insecure -o sample_data/downloaded_json_files/chr2.json
curl 'http://annoq.org/api/annoq-annotations-v2/_search' -H 'Accept: */*' -H 'Accept-Language: en-GB,en-US;q=0.9,en;q=0.8' -H 'Connection: keep-alive' -H 'Cookie: _ga=GA1.1.477605867.1691795845; _ga_ZRDY68GK00=GS1.1.1712360539.93.1.1712360549.0.0.0' -H 'Origin: http://annoq.org' -H 'Referer: http://annoq.org/search' -H 'User-Agent: Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/123.0.0.0 Safari/537.36' -H 'content-type: application/json' --data-raw '{"_source":["chr","pos","ref","alt","rs_dbSNP151","VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"],"aggs":{"chr":{"filter":{"exists":{"field":"chr"}}},"pos_min":{"min":{"field":"pos"}},"pos_max":{"max":{"field":"pos"}},"pos":{"filter":{"exists":{"field":"pos"}}},"ref":{"filter":{"exists":{"field":"ref"}}},"alt":{"filter":{"exists":{"field":"alt"}}},"rs_dbSNP151":{"filter":{"exists":{"field":"rs_dbSNP151"}}},"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id":{"filter":{"exists":{"field":"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"}}}},"query":{"bool":{"filter":[{"term":{"chr":3}},{"range":{"pos":{"gte":1,"lte":500000}}},{"exists":{"field":"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"}}],"must":[]}},"from":100,"size":50}' --insecure -o sample_data/downloaded_json_files/chr3.json
curl 'http://annoq.org/api/annoq-annotations-v2/_search' -H 'Accept: */*' -H 'Accept-Language: en-GB,en-US;q=0.9,en;q=0.8' -H 'Connection: keep-alive' -H 'Cookie: _ga=GA1.1.477605867.1691795845; _ga_ZRDY68GK00=GS1.1.1712360539.93.1.1712360549.0.0.0' -H 'Origin: http://annoq.org' -H 'Referer: http://annoq.org/search' -H 'User-Agent: Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/123.0.0.0 Safari/537.36' -H 'content-type: application/json' --data-raw '{"_source":["chr","pos","ref","alt","rs_dbSNP151","VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"],"aggs":{"chr":{"filter":{"exists":{"field":"chr"}}},"pos_min":{"min":{"field":"pos"}},"pos_max":{"max":{"field":"pos"}},"pos":{"filter":{"exists":{"field":"pos"}}},"ref":{"filter":{"exists":{"field":"ref"}}},"alt":{"filter":{"exists":{"field":"alt"}}},"rs_dbSNP151":{"filter":{"exists":{"field":"rs_dbSNP151"}}},"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id":{"filter":{"exists":{"field":"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"}}}},"query":{"bool":{"filter":[{"term":{"chr":4}},{"range":{"pos":{"gte":1,"lte":500000}}},{"exists":{"field":"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"}}],"must":[]}},"from":100,"size":50}' --insecure -o sample_data/downloaded_json_files/chr4.json
curl 'http://annoq.org/api/annoq-annotations-v2/_search' -H 'Accept: */*' -H 'Accept-Language: en-GB,en-US;q=0.9,en;q=0.8' -H 'Connection: keep-alive' -H 'Cookie: _ga=GA1.1.477605867.1691795845; _ga_ZRDY68GK00=GS1.1.1712360539.93.1.1712360549.0.0.0' -H 'Origin: http://annoq.org' -H 'Referer: http://annoq.org/search' -H 'User-Agent: Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/123.0.0.0 Safari/537.36' -H 'content-type: application/json' --data-raw '{"_source":["chr","pos","ref","alt","rs_dbSNP151","VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"],"aggs":{"chr":{"filter":{"exists":{"field":"chr"}}},"pos_min":{"min":{"field":"pos"}},"pos_max":{"max":{"field":"pos"}},"pos":{"filter":{"exists":{"field":"pos"}}},"ref":{"filter":{"exists":{"field":"ref"}}},"alt":{"filter":{"exists":{"field":"alt"}}},"rs_dbSNP151":{"filter":{"exists":{"field":"rs_dbSNP151"}}},"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id":{"filter":{"exists":{"field":"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"}}}},"query":{"bool":{"filter":[{"term":{"chr":5}},{"range":{"pos":{"gte":1,"lte":500000}}},{"exists":{"field":"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"}}],"must":[]}},"from":100,"size":50}' --insecure -o sample_data/downloaded_json_files/chr5.json
curl 'http://annoq.org/api/annoq-annotations-v2/_search' -H 'Accept: */*' -H 'Accept-Language: en-GB,en-US;q=0.9,en;q=0.8' -H 'Connection: keep-alive' -H 'Cookie: _ga=GA1.1.477605867.1691795845; _ga_ZRDY68GK00=GS1.1.1712360539.93.1.1712360549.0.0.0' -H 'Origin: http://annoq.org' -H 'Referer: http://annoq.org/search' -H 'User-Agent: Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/123.0.0.0 Safari/537.36' -H 'content-type: application/json' --data-raw '{"_source":["chr","pos","ref","alt","rs_dbSNP151","VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"],"aggs":{"chr":{"filter":{"exists":{"field":"chr"}}},"pos_min":{"min":{"field":"pos"}},"pos_max":{"max":{"field":"pos"}},"pos":{"filter":{"exists":{"field":"pos"}}},"ref":{"filter":{"exists":{"field":"ref"}}},"alt":{"filter":{"exists":{"field":"alt"}}},"rs_dbSNP151":{"filter":{"exists":{"field":"rs_dbSNP151"}}},"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id":{"filter":{"exists":{"field":"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"}}}},"query":{"bool":{"filter":[{"term":{"chr":6}},{"range":{"pos":{"gte":1,"lte":500000}}},{"exists":{"field":"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"}}],"must":[]}},"from":100,"size":50}' --insecure -o sample_data/downloaded_json_files/chr6.json
curl 'http://annoq.org/api/annoq-annotations-v2/_search' -H 'Accept: */*' -H 'Accept-Language: en-GB,en-US;q=0.9,en;q=0.8' -H 'Connection: keep-alive' -H 'Cookie: _ga=GA1.1.477605867.1691795845; _ga_ZRDY68GK00=GS1.1.1712360539.93.1.1712360549.0.0.0' -H 'Origin: http://annoq.org' -H 'Referer: http://annoq.org/search' -H 'User-Agent: Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/123.0.0.0 Safari/537.36' -H 'content-type: application/json' --data-raw '{"_source":["chr","pos","ref","alt","rs_dbSNP151","VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"],"aggs":{"chr":{"filter":{"exists":{"field":"chr"}}},"pos_min":{"min":{"field":"pos"}},"pos_max":{"max":{"field":"pos"}},"pos":{"filter":{"exists":{"field":"pos"}}},"ref":{"filter":{"exists":{"field":"ref"}}},"alt":{"filter":{"exists":{"field":"alt"}}},"rs_dbSNP151":{"filter":{"exists":{"field":"rs_dbSNP151"}}},"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id":{"filter":{"exists":{"field":"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"}}}},"query":{"bool":{"filter":[{"term":{"chr":7}},{"range":{"pos":{"gte":1,"lte":500000}}},{"exists":{"field":"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"}}],"must":[]}},"from":100,"size":50}' --insecure -o sample_data/downloaded_json_files/chr7.json
curl 'http://annoq.org/api/annoq-annotations-v2/_search' -H 'Accept: */*' -H 'Accept-Language: en-GB,en-US;q=0.9,en;q=0.8' -H 'Connection: keep-alive' -H 'Cookie: _ga=GA1.1.477605867.1691795845; _ga_ZRDY68GK00=GS1.1.1712360539.93.1.1712360549.0.0.0' -H 'Origin: http://annoq.org' -H 'Referer: http://annoq.org/search' -H 'User-Agent: Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/123.0.0.0 Safari/537.36' -H 'content-type: application/json' --data-raw '{"_source":["chr","pos","ref","alt","rs_dbSNP151","VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"],"aggs":{"chr":{"filter":{"exists":{"field":"chr"}}},"pos_min":{"min":{"field":"pos"}},"pos_max":{"max":{"field":"pos"}},"pos":{"filter":{"exists":{"field":"pos"}}},"ref":{"filter":{"exists":{"field":"ref"}}},"alt":{"filter":{"exists":{"field":"alt"}}},"rs_dbSNP151":{"filter":{"exists":{"field":"rs_dbSNP151"}}},"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id":{"filter":{"exists":{"field":"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"}}}},"query":{"bool":{"filter":[{"term":{"chr":8}},{"range":{"pos":{"gte":1,"lte":500000}}},{"exists":{"field":"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"}}],"must":[]}},"from":100,"size":50}' --insecure -o sample_data/downloaded_json_files/chr8.json
curl 'http://annoq.org/api/annoq-annotations-v2/_search' -H 'Accept: */*' -H 'Accept-Language: en-GB,en-US;q=0.9,en;q=0.8' -H 'Connection: keep-alive' -H 'Cookie: _ga=GA1.1.477605867.1691795845; _ga_ZRDY68GK00=GS1.1.1712360539.93.1.1712360549.0.0.0' -H 'Origin: http://annoq.org' -H 'Referer: http://annoq.org/search' -H 'User-Agent: Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/123.0.0.0 Safari/537.36' -H 'content-type: application/json' --data-raw '{"_source":["chr","pos","ref","alt","rs_dbSNP151","VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"],"aggs":{"chr":{"filter":{"exists":{"field":"chr"}}},"pos_min":{"min":{"field":"pos"}},"pos_max":{"max":{"field":"pos"}},"pos":{"filter":{"exists":{"field":"pos"}}},"ref":{"filter":{"exists":{"field":"ref"}}},"alt":{"filter":{"exists":{"field":"alt"}}},"rs_dbSNP151":{"filter":{"exists":{"field":"rs_dbSNP151"}}},"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id":{"filter":{"exists":{"field":"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"}}}},"query":{"bool":{"filter":[{"term":{"chr":9}},{"range":{"pos":{"gte":1,"lte":500000}}},{"exists":{"field":"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"}}],"must":[]}},"from":100,"size":50}' --insecure -o sample_data/downloaded_json_files/chr9.json
curl 'http://annoq.org/api/annoq-annotations-v2/_search' -H 'Accept: */*' -H 'Accept-Language: en-GB,en-US;q=0.9,en;q=0.8' -H 'Connection: keep-alive' -H 'Cookie: _ga=GA1.1.477605867.1691795845; _ga_ZRDY68GK00=GS1.1.1712360539.93.1.1712360549.0.0.0' -H 'Origin: http://annoq.org' -H 'Referer: http://annoq.org/search' -H 'User-Agent: Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/123.0.0.0 Safari/537.36' -H 'content-type: application/json' --data-raw '{"_source":["chr","pos","ref","alt","rs_dbSNP151","VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"],"aggs":{"chr":{"filter":{"exists":{"field":"chr"}}},"pos_min":{"min":{"field":"pos"}},"pos_max":{"max":{"field":"pos"}},"pos":{"filter":{"exists":{"field":"pos"}}},"ref":{"filter":{"exists":{"field":"ref"}}},"alt":{"filter":{"exists":{"field":"alt"}}},"rs_dbSNP151":{"filter":{"exists":{"field":"rs_dbSNP151"}}},"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id":{"filter":{"exists":{"field":"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"}}}},"query":{"bool":{"filter":[{"term":{"chr":10}},{"range":{"pos":{"gte":1,"lte":500000}}},{"exists":{"field":"VEP_refseq_PANTHER_GO_SLIM_cellular_component_list_id"}}],"must":[]}},"from":100,"size":50}' --insecure -o sample_data/downloaded_json_files/chr10.json