2c. Run Report Scenarios #3
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| ### https://github.com/actions/upload-artifact | |
| ### https://github.blog/changelog/2021-11-10-github-actions-input-types-for-manual-workflows/ | |
| ### https://docs.github.com/en/actions/using-workflows/caching-dependencies-to-speed-up-workflows | |
| ### https://github.com/r-lib/actions/tree/v2/setup-r-dependencies | |
| ### https://docs.github.com/en/actions/using-jobs/using-conditions-to-control-job-execution | |
| ### Single line conditional can use ${{}} formulation. Multi-line conditional does not. | |
| ### For uploading artifacts: | |
| ### "path:" is the output path where Pandoc will write the compiled PDF. | |
| ### Note, this should be the same directory as the input paper.md | |
| name: 2c. Run Report Scenarios | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| doScenarios: | |
| type: choice | |
| description: Do you want to generate scenario results for report figures? | |
| required: true | |
| options: | |
| - no | |
| - yes | |
| sector: | |
| type: string | |
| description: Which sectors do you want to run? Enter "all", "gcm", "slr", or specific sector name | |
| default: "all" | |
| jobs: | |
| run_scenarios: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| name: Load Package Code | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Send input status | |
| run: | | |
| echo "ref_name = ${{ github.ref_name }}" | |
| echo "doScenarios = ${{ inputs.doScenarios }}" | |
| echo "sector = ${{ inputs.sector }}" | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Setup R package dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| cache: true | |
| cache-version: 1 | |
| packages: | | |
| any::tidyverse | |
| any::devtools | |
| any::openxlsx | |
| any::ggpubr | |
| ### Install FrEDI from new branch and get results | |
| ### Install FrEDI from ref branch and get results | |
| - name: Test results | |
| # if: | | |
| # inputs.doScenarios == 'true' | |
| run: | | |
| Rscript -e ' | |
| ###### Libraries ### | |
| require(tidyverse) | |
| require(devtools) | |
| require(openxlsx) | |
| require(ggpubr) | |
| ###### Workflow Inputs ###### | |
| # doScenarios <- "${{ inputs.doScenarios }}" %in% c("true", "yes") | |
| newBranch <- "${{ github.ref_name }}" | |
| sectors0 <- "${{ inputs.sector }}" | |
| ###### Paths ###### | |
| ### Main repo path, FrEDI project path, scripts path | |
| rPath0 <- "."; | |
| # pPath0 <- rPath0 |> file.path("FrEDI") | |
| pPath0 <- rPath0 | |
| ### Load scripts and testing functions | |
| sPath0 <- pPath0 |> file.path("scripts") | |
| tPath0 <- pPath0 |> file.path("testing") | |
| sFiles0 <- sPath0 |> list.files(full.names=TRUE) | |
| tFiles0 <- tPath0 |> list.files(full.names=TRUE) | |
| rmd_file <- tFiles0[grepl(".rmd",tFiles0)] | |
| tFiles0 <- tFiles0[!grepl(".rmd",tFiles0)] | |
| for(file_i in sFiles0){file_i |> source(); rm(file_i)} | |
| for(file_i in tFiles0){file_i |> source(); rm(file_i)} | |
| ### Where to save results | |
| oPath0 <- pPath0 |> file.path("data_tests") | |
| oFileNew <- oPath0 |> file.path("newResults.rda") | |
| oFileRef <- oPath0 |> file.path("refResults.rda") | |
| ### Check if path exists and, if not, create it | |
| exists0 <- oPath0 |> dir.exists() | |
| if(!exists0) oPath0 |> dir.create(recursive=TRUE) | |
| ###### Repo Info ###### | |
| urlRepo <- "https://github.com/USEPA/FrEDI" | |
| c(newBranch) |> print() | |
| ###### ** Install FrEDI from New Branch ###### | |
| ### Install FrEDI from new branch | |
| devtools::install_github( | |
| repo=urlRepo, ref=newBranch, | |
| dependencies=F, upgrade="never", force=T, type="source" | |
| ) ### End install_github | |
| require(FrEDI) | |
| ###### Sectors & Years ###### | |
| ### Format sector names | |
| sectors0 |> print() | |
| sectors0 <- sectors0 |> str_split(pattern=",") |> unlist() |> trimws() | |
| sectorsLC0 <- sectors0 |> tolower() | |
| doAll <- "all" %in% sectorsLC0 | |
| doGcm <- "gcm" %in% sectorsLC0 | |
| doSlr <- "slr" %in% sectorsLC0 | |
| if (doAll) sectors <- NULL else if (doGcm) sectors <- FrEDI::get_sectorInfo(gcmOnly=T) else if | |
| (doSlr) sectors <- FrEDI::get_sectorInfo(slrOnly=T) else | |
| sectors <- sectors0 | |
| sectors |> print() | |
| ### Which years to report on for GCM, SLR sectors | |
| gcmYears0 <- c(2010, 2090) | |
| slrYears0 <- c(2050, 2090) | |
| ###### Run Scenarios ###### | |
| ###### ** Setup Scenarios ###### | |
| ### CONUS temps | |
| conusTemps <- list( | |
| temps = c(0:10), | |
| tempLabels = c(0:10), | |
| tempType = "conus", | |
| prefix = "Other_Integer" | |
| ) ### End list | |
| ### Global temps | |
| globalTemps <- list( | |
| temps = c(1.487, 2.198), | |
| tempLabels = c(1.5, 2), | |
| tempType = "global", | |
| prefix = "preI_global" | |
| ) ### End list | |
| ### Temps list | |
| tempsList <- list(conus=conusTemps, global=globalTemps) | |
| rm(conusTemps, globalTemps) | |
| ###### ** Run Scenarios ###### | |
| ### aggOnly=Whether to only include sectors for which "includeaggregate==1" in Fig 7 plots | |
| ### Run scenarios | |
| dfResults <- run_constantTempScenarios( | |
| sectors = sectors, | |
| tempList = tempsList, | |
| gcmYears = gcmYears0, | |
| slrYears = slrYears0, | |
| aggOnly = FALSE, | |
| loadCode = "project", | |
| silent = TRUE , | |
| testing = FALSE, | |
| fpath = pPath0, | |
| saveFile = TRUE , | |
| outPath = oPath0, | |
| return = FALSE | |
| ) ### End run_constantTempScenarios | |
| "Finished running scenarios..." |> print() | |
| oPath0 |> list.files() |> print() | |
| rm(dfResults) | |
| ###### Return ###### | |
| "Finished running report scenarios." |> print() | |
| ' | |
| - name: Upload Scenario Results | |
| if: | | |
| inputs.doScenarios == 'true' | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: scenario_results | |
| path: | | |
| ./data_tests/* | |