Add progress bar and verbose flag to lfmcmc #534
Workflow file for this run
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| # This workflow uses actions that are not certified by GitHub. | |
| # They are provided by a third-party and are governed by | |
| # separate terms of service, privacy policy, and support | |
| # documentation. | |
| # | |
| # See https://github.com/r-lib/actions/tree/master/examples#readme for | |
| # additional example workflows available for the R community. | |
| name: Tests | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| jobs: | |
| test-macos: | |
| runs-on: macos-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Check | |
| run: | | |
| brew install llvm@14 | |
| echo 'export PATH="/usr/local/opt/llvm@14/bin:$PATH"' >> /Users/runner/.bash_profile | |
| cd tests && make main.a && ./main.a | |
| test-macos-clang18: | |
| runs-on: macos-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Check | |
| run: | | |
| brew install llvm@18 | |
| echo 'export PATH="/usr/local/opt/llvm@18/bin:$PATH"' >> /Users/runner/.bash_profile | |
| cd tests && make main.a && ./main.a | |
| test-ubuntu: | |
| runs-on: ubuntu-latest | |
| container: gvegayon/epiworld:latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Check | |
| env: | |
| OPENMP: -fopenmp | |
| run: | | |
| cd tests | |
| make main.o | |
| ./main.o | |
| test-epiworld-r: | |
| runs-on: ubuntu-latest | |
| container: rocker/r2u:latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/checkout@v4 | |
| with: | |
| repository: UofUEpiBio/epiworldR | |
| path: ./r-pkg | |
| - name: Getting epiworldR | |
| run: | | |
| install2.r knitr rmarkdown tinytest netplot igraph data.table | |
| apt-get update && apt-get install -y --no-install-recommends pandoc | |
| cp -r include/epiworld/ r-pkg/inst/include/epiworld/ | |
| R CMD build r-pkg | |
| R CMD check --no-manual epiworldR_*.tar.gz | |
| test-epiworld-r-valgrind: | |
| runs-on: ubuntu-latest | |
| container: rocker/r2u:latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/checkout@v4 | |
| with: | |
| repository: UofUEpiBio/epiworldR | |
| path: ./r-pkg | |
| - name: Getting epiworldR | |
| run: | | |
| install2.r knitr rmarkdown tinytest netplot igraph data.table | |
| apt-get update && apt-get install -y --no-install-recommends \ | |
| pandoc valgrind | |
| cp -r include/epiworld/ r-pkg/inst/include/epiworld/ | |
| R CMD build r-pkg | |
| R CMD check --no-manual --use-valgrind epiworldR_*.tar.gz |