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UofUEpiBio · Dec 10, 2024 · 320606b · 320606b
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diff --git a/.github/.gitignore b/.github/.gitignore
@@ -0,0 +1 @@
+*.html
diff --git a/NAMESPACE b/NAMESPACE
@@ -7,6 +7,7 @@ export(filter_non_null)
 export(filter_non_null_infected)
 export(generate_theta)
 export(plot_results)
+export(prepare_data)
 export(prepare_data_for_tensorflow)
 export(prepare_data_infected)
 export(preprocessing_data)

diff --git a/man/prepare_data.Rd b/man/prepare_data.Rd
diff --git a/man/run_simulations.Rd b/man/run_simulations.Rd
diff --git a/man/simulate_calibrate_sir.Rd b/man/simulate_calibrate_sir.Rd
diff --git a/man/train_model.Rd b/man/train_model.Rd
diff --git a/tests/testthat.R b/tests/testthat.R
@@ -7,6 +7,6 @@
 # * https://testthat.r-lib.org/articles/special-files.html
 
 library(testthat)
-library(myfirst.package)
+library(epiworldRcalibrate)
 
-test_check("myfirst.package")
+test_check("epiworldRcalibrate")
diff --git a/vignettes/calibrate.Rmd b/vignettes/calibrate.Rmd
@@ -18,19 +18,23 @@ The vignette guides you through the different stages of the function, including
 ## Prerequisites
 
 Ensure that the following libraries are installed and loaded:
-
-```{r}
-library(epiworldRcalibrate)
+```{r setup, include = FALSE}
+knitr::opts_chunk$set(
+  eval = FALSE, # Globally disables evaluation of all chunks
+  echo = TRUE   # Shows code in the vignette but does not run it
+)
 ```
 
+
+
 ```{r}
 library(epiworldR)
-library(epiworldRcalibrate)
 library(keras3)
 library(data.table)
 library(tensorflow)
 library(reticulate)
 reticulate::import("numpy")
+library(epiworldRcalibrate)
 ```
 
 # Function Overview