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added info about asymptomatic priors
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Nick Malleson committed Dec 3, 2020
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2 changes: 1 addition & 1 deletion experiments/calibration/abc-1.ipynb
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"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.5"
"version": "3.7.6"
}
},
"nbformat": 4,
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18 changes: 14 additions & 4 deletions experiments/calibration/abc-2.ipynb
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"\n",
"Multi-paramter calibration of the RAMP model using Approximate Bayesian Computation\n",
"\n",
"Based on [abc-1.ipynb](abc-1.ipynb). See that file for a more detailed technical description. This file calibrates on the location-specific hazard multipliers (e.g. to see if the algorithm can work out how hazardous the different location types are). These are:\n",
" - XXXX \n",
" - XXXX "
"Based on [abc-1.ipynb](abc-1.ipynb). See that file for a more detailed technical description. This file calibrates on the location-specific hazard multipliers (e.g. to see if the algorithm can work out how hazardous the different location types are). The full list of parameters:\n",
"\n",
"## Asymptomatic multiplier (`asymptomatic`)\n",
"\n",
"This is tricky because we don't know the hazard associated with asymptomatic transmission. James Salter used a prior of: N(0.444, 0.155) which gives the middle 95% as [0.138, 0.75] ([0.138 estimated here](https://www.medrxiv.org/content/10.1101/2020.06.04.20121434v2), [0.58 estimated here](https://jammi.utpjournals.press/doi/abs/10.3138/jammi-2020-0030), [0.75 estimated here (Table 1)](https://www.cdc.gov/coronavirus/2019-ncov/hcp/planning-scenarios.html). \n",
"\n",
"## Presymptomatic and symptomatic multipliers\n",
"\n",
"Are fixed at 1 \n",
"\n",
"## Location hazards:\n",
"\n",
" - XXXX Outline the hazards and priors\n"
]
},
{
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"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.5"
"version": "3.7.6"
}
},
"nbformat": 4,
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