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loosen tolerance in order-4 CP unit tests which fail on Linux CI jobs… #436

loosen tolerance in order-4 CP unit tests which fail on Linux CI jobs…

loosen tolerance in order-4 CP unit tests which fail on Linux CI jobs… #436

Workflow file for this run

name: Linux/MacOS Build
on: [push, pull_request]
#env:
jobs:
build:
strategy:
fail-fast: false
matrix:
build_type : [ Release, Debug ]
os : [ macos-latest, ubuntu-22.04 ]
linalg : [netlib, vendor]
include:
- os: ubuntu-22.04
cc: /usr/bin/gcc-12
cxx: /usr/bin/g++-12
- os: macos-latest
cc: clang
cxx: clang++
name: "${{ matrix.os }}: ${{ matrix.cxx }} ${{ matrix.build_type }} linalg=${{ matrix.linalg }}"
runs-on: ${{ matrix.os }}
env:
CXX : ${{ matrix.cxx }}
DOXYGEN_VERSION : 1.12.0
CCACHE_DIR : ${{github.workspace}}/build/.ccache
CCACHE_COMPRESS : true
CCACHE_COMPRESSLEVEL : 6
BUILD_CONFIG : >
-G Ninja
-DCMAKE_BUILD_TYPE=${{ matrix.build_type }}
-DCMAKE_PREFIX_PATH=/usr/local/opt/bison
-DBUILD_SHARED_LIBS=OFF
-DMPIEXEC_PREFLAGS='--bind-to;none;--allow-run-as-root'
-DCMAKE_INSTALL_PREFIX=${{github.workspace}}/install
steps:
- uses: actions/checkout@v2
- name: Create Build Environment
# Some projects don't allow in-source building, so create a separate build directory
# We'll use this as our working directory for all subsequent commands
run: cmake -E make_directory ${{github.workspace}}/build
- name: Install prerequisite MacOS packages
if: ${{ matrix.os == 'macos-latest' }}
run: |
brew install ninja boost eigen open-mpi bison ccache
# install Netlib if want generic linalg
if [ "${{matrix.linalg}}" = "netlib" ]; then
brew install lapack
echo "BLAS_PREFERENCE_LIST=ReferenceBLAS" >> $GITHUB_ENV
else
echo "BLAS_PREFERENCE_LIST=Accelerate" >> $GITHUB_ENV
fi
- name: Install prerequisites Ubuntu packages
if: ${{ matrix.os == 'ubuntu-22.04' }}
run: |
sudo apt-get update
sudo apt-get install ninja-build g++-12 liblapack-dev libboost-dev libboost-serialization-dev libboost-random-dev libeigen3-dev openmpi-bin libopenmpi-dev libtbb-dev ccache
if [ "${{matrix.build_type}}" = "Release" ]; then
sudo apt-get install graphviz fonts-liberation
cd ${{github.workspace}}/build
# If we fail getting doxygen-${DOXYGEN_VERSION}.linux.bin.tar.gz from sourceforge,
# use EFV's gdrive mirror of 1.9.2 to work around the unreliable sourceforge
# the sharing link: https://drive.google.com/file/d/16GXpH4YOEUxGXQrXOKdAIibhdfzATY0d/view?usp=sharing
wget https://www.doxygen.nl/files/doxygen-${DOXYGEN_VERSION}.linux.bin.tar.gz
tar xzf ./doxygen-${DOXYGEN_VERSION}.linux.bin.tar.gz
export DOXYGEN_DIR=${{github.workspace}}/build/doxygen-${DOXYGEN_VERSION}
${DOXYGEN_DIR}/bin/doxygen --version
# doxygen should be in PATH in subsequent steps
echo "${DOXYGEN_DIR}/bin" >> $GITHUB_PATH
fi
# install MKL if want vendor linalg
if [ "${{matrix.linalg}}" = "vendor" ]; then
sudo sh -c 'wget -O - https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | gpg --dearmor > /usr/share/keyrings/oneapi-archive-keyring.gpg'
sudo sh -c 'echo "deb [signed-by=/usr/share/keyrings/oneapi-archive-keyring.gpg] https://apt.repos.intel.com/oneapi all main" > /etc/apt/sources.list.d/oneAPI.list'
sudo apt-get -yq update
sudo apt-get install intel-oneapi-mkl-devel
echo "BLAS_PREFERENCE_LIST=IntelMKL" >> $GITHUB_ENV
echo "MKLROOT=/opt/intel/oneapi/mkl/latest" >> $GITHUB_ENV
echo "MKL_NUM_THREADS=1" >> $GITHUB_ENV
else
echo "BLAS_PREFERENCE_LIST=ReferenceBLAS" >> $GITHUB_ENV
fi
- name: Prepare ccache timestamp
id: ccache_cache_timestamp
shell: cmake -P {0}
run: |
string(TIMESTAMP current_date "%Y-%m-%d-%H;%M;%S" UTC)
message("::set-output name=timestamp::${current_date}")
- name: Setup ccache cache files
uses: actions/[email protected]
with:
path: ${{github.workspace}}/build/.ccache
key: ${{ matrix.config.name }}-ccache-${{ steps.ccache_cache_timestamp.outputs.timestamp }}
restore-keys: |
${{ matrix.config.name }}-ccache-
- name: Configure CMake
# Use a bash shell so we can use the same syntax for environment variable
# access regardless of the host operating system
shell: bash
working-directory: ${{github.workspace}}/build
# Note the current convention is to use the -S and -B options here to specify source
# and build directories, but this is only available with CMake 3.13 and higher.
# The CMake binaries on the Github Actions machines are (as of this writing) 3.12
run: |
cmake $GITHUB_WORKSPACE -DCMAKE_BUILD_TYPE=$BUILD_TYPE -DBLAS_PREFERENCE_LIST=$BLAS_PREFERENCE_LIST $BUILD_CONFIG || (cat CMakeFiles/CMakeConfigureLog.yaml)
- name: Build
working-directory: ${{github.workspace}}/build
shell: bash
# Execute the build. You can specify a specific target with "--target <NAME>"
run: ccache -p && ccache -z && cmake --build . && ccache -s
- name: Test
working-directory: ${{github.workspace}}/build
shell: bash
# Execute tests defined by the CMake configuration.
# See https://cmake.org/cmake/help/latest/manual/ctest.1.html for more detail
# run: ctest -C $BUILD_TYPE
run: cmake --build . --target check-btas
- name: Install
working-directory: ${{github.workspace}}/build
shell: bash
run: cmake --build . --target install
- name: Test Install Tree
working-directory: ${{github.workspace}}/build
shell: bash
run: |
cmake -S $GITHUB_WORKSPACE/doc/examples -B test_install -DCMAKE_PREFIX_PATH=${{github.workspace}}/install
cmake --build test_install
- name: Build+Deploy Dox
if: ${{ matrix.os == 'ubuntu-22.04' && matrix.build_type == 'Release' && github.ref == 'refs/heads/master' }}
working-directory: ${{github.workspace}}/build
shell: bash
run: |
#echo "== deploying dox =="
#git config --global user.email "[email protected]"
#git config --global user.name "GitHub Actions"
cmake --build . --target html
#git clone --depth=1 https://github.com/ValeevGroup/BTAS.git --branch gh-pages --single-branch btas-docs-current
#git clone --depth=1 https://github.com/ValeevGroup/BTAS.git --branch gh-pages-template --single-branch btas-docs-template