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Release 2024.4.1 #334

Merged
merged 73 commits into from
Oct 17, 2024
Merged

Release 2024.4.1 #334

merged 73 commits into from
Oct 17, 2024

Conversation

EstelleDa and others added 30 commits August 8, 2024 15:43
…ons-for-subresources

Permissions for Sub-Resources
Previously, worker jobs used score set URNs to identify resources on which they should operate.
Due to the nature of these async jobs and the fact that URNs can change on score set publication,
this was a poor choice for processes that might defer execution until a moment in time after the
resource identifier had changed.

This commit updates worker processes to operate on internal database identifiers to identify the
resources on which they should work. This should protect us from instances where the URN changes
and the worker process no longer can access the resource on which it was spawned.
Providing a score set to the mapping manager implied it was managing the passed score set,
when it was really managing the head of the mapping queue. Eliminates that argument to the
manager to make the function signature more idiomatic to the job purpose.
…eriment, experiment set and score set.

Add some related tests.
…ion, add more tests and move original tests to one file.
bencap and others added 23 commits October 9, 2024 15:11
…t to a public experiment.

Add some related tests.
Modified has_permission function so that any users can add a score set to a public experiment.
Change related tests names and add few more tests based on new has_permission function.
…-fully-qualified-variants-for-accession-based-score-sets

Require fully qualified variants for accession based score sets
Adds tests that ensure workflow invocations succeed on the worker. These tests ensure
that worker jobs which invoke other worker jobs are functioning correctly.
Refresh Dependencies for High Severity Dependabot Alerts
…heck

Add router functions to check whether users have authorization in experiment, experiment set and score set.
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bencap commented Oct 11, 2024

@bencap bencap marked this pull request as ready for review October 16, 2024 21:55
@bencap bencap merged commit 65dd9cb into main Oct 17, 2024
15 checks passed
@bencap bencap deleted the release-2024.4.1 branch October 17, 2024 18:10
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