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test: remove deliberate PyCall build from Dockerfile
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Timothy Divoll committed Aug 16, 2023
1 parent 72c9896 commit ce08096
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Showing 2 changed files with 4 additions and 4 deletions.
2 changes: 1 addition & 1 deletion Dockerfile
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Expand Up @@ -14,7 +14,7 @@ WORKDIR /opt

RUN git clone https://github.com/WilhelmusLab/ice-floe-tracker-pipeline.git

RUN /usr/local/julia/bin/julia --project="/opt/ice-floe-tracker-pipeline" -e 'ENV["PYTHON"]="/usr/local/bin/python"; using Pkg; Pkg.instantiate(); Pkg.precompile(); Pkg.build("PyCall")'
RUN /usr/local/julia/bin/julia --project="/opt/ice-floe-tracker-pipeline" -e 'ENV["PYTHON"]="/usr/local/bin/python"; using Pkg; Pkg.build()'

COPY workflow/scripts/ice-floe-tracker.jl /usr/local/bin/ice-floe-tracker.jl

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6 changes: 3 additions & 3 deletions config/cylc_hpc/flow.cylc
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Expand Up @@ -5,7 +5,7 @@
initial cycle point = 1
[[graph]]
R1 = """
mkpaths & pullfetchimage => fetchdata & soit & pulljuliaimage => landmask => preprocess => extractfeatures => tracking & exportH5
mkpaths & pullfetchimage & pulljuliaimage => fetchdata & soit => landmask => preprocess => extractfeatures => tracking & exportH5
"""
[runtime]
[[root]]
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"""
[[pullfetchimage]]
script = """
apptainer build $project_dir/fetchdata.simg docker://brownccv/icefloetracker-fetchdata:main
apptainer build --force $project_dir/fetchdata.simg docker://brownccv/icefloetracker-fetchdata:main
"""
[[fetchdata]]
script = """
Expand All @@ -53,7 +53,7 @@
"""
[[pulljuliaimage]]
script = """
apptainer build $project_dir/icefloetracker-julia.simg docker://brownccv/icefloetracker-julia:pr-53
apptainer build --force $project_dir/icefloetracker-julia.simg docker://brownccv/icefloetracker-julia:pr-45
"""
[[landmask]]
script = """
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