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refactor: update Dockerfile for IFTPipeline.jl #174

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refactor: update Dockerfile for IFTPipeline.jl #174

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Commits on Oct 25, 2024

  1. move cli file to src directory

    @hollandjg
    hollandjg committed Oct 25, 2024
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  2. update dockerfile to use the new path to CLI file

    @hollandjg
    hollandjg committed Oct 25, 2024
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  3. re-add shell

    @hollandjg
    hollandjg committed Oct 25, 2024
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  4. quote variables in entrypoint

    @hollandjg
    hollandjg committed Oct 25, 2024
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  5. reorder dockerfile to reduce time taken to rerun

    @hollandjg
    hollandjg committed Oct 25, 2024
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  6. update comments

    @hollandjg
    hollandjg committed Oct 25, 2024
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  7. update dockerfile

    @hollandjg
    hollandjg committed Oct 25, 2024
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  8. broken setup of Dockerfile – libcurl doesn't work when loading pycall… 

    … within Julia
    @hollandjg
    hollandjg committed Oct 25, 2024
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  9. add missing serialization dependency

    @hollandjg
    hollandjg committed Oct 25, 2024
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  10. update dockerfile to include installing conda from an environment file

    @hollandjg
    hollandjg committed Oct 25, 2024
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Commits on Oct 26, 2024

  1. move sample tracker params into test directory

    @hollandjg
    hollandjg committed Oct 26, 2024
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  2. fix crash on testing when we're not running cli.jl directly

    @hollandjg
    hollandjg committed Oct 26, 2024
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  3. move cli-config code into cli

    @hollandjg
    hollandjg committed Oct 26, 2024
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  4. remove commented code in dockerfile

    @hollandjg
    hollandjg committed Oct 26, 2024
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  5. make a setup-python script which handles setting up the python enviro… 

    …nment and only needs to be run once
    @hollandjg
    hollandjg committed Oct 26, 2024
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  6. remove extra newline

    @hollandjg
    hollandjg committed Oct 26, 2024
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  7. Revert "make a setup-python script which handles setting up the pytho… 

    …n environment and only needs to be run once"

This reverts commit 43f4187.
    @hollandjg
    hollandjg committed Oct 26, 2024
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  8. add entrypoint to go straight to IFT

    @hollandjg
    hollandjg committed Oct 26, 2024
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  9. simplify the python setup using an additional little package

    @hollandjg
    hollandjg committed Oct 26, 2024
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  10. update dockerfile to test the package in a separate step

    @hollandjg
    hollandjg committed Oct 26, 2024
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  11. remove extra ARGS variable not working in Docker

    @hollandjg
    hollandjg committed Oct 26, 2024
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  12. fix julia call at Entrypoign

    @hollandjg
    hollandjg committed Oct 26, 2024
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  13. delete unneeded requirements.txt

    @hollandjg
    hollandjg committed Oct 26, 2024
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  14. fix passing arguments directly to entrypoint

    @hollandjg
    hollandjg committed Oct 26, 2024
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  15. remove variables which don't always work

    @hollandjg
    hollandjg committed Oct 26, 2024
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  16. remove additional installs, not required for tests to pass

    @hollandjg
    hollandjg committed Oct 26, 2024
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  17. remove updates – just go straight to the base image for reproducible … 

    …builds
    @hollandjg
    hollandjg committed Oct 26, 2024
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  18. update testing script to set up python correctly

    @hollandjg
    hollandjg committed Oct 26, 2024
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  19. switch soit to running under pipx

    @hollandjg
    hollandjg committed Oct 26, 2024
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  20. remove some unneeded dependencies from the Python environment

    @hollandjg
    hollandjg committed Oct 26, 2024
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Commits on Oct 28, 2024

  1. add missing line-end

    @hollandjg
    hollandjg committed Oct 28, 2024
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  2. add missing newline

    @hollandjg
    hollandjg committed Oct 28, 2024
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  3. add a new setup script for the Conda environment

    @hollandjg
    hollandjg committed Oct 28, 2024
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  4. add missing newlines

    @hollandjg
    hollandjg committed Oct 28, 2024
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  5. Merge branch 'jghrefactor/A-gather-julia-package-in-new-directory' in… 

    …to jghrefactor/A1-update-dockerfile
    @hollandjg
    hollandjg authored Oct 28, 2024
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  6. Merge branch 'jghrefactor/A-gather-julia-package-in-new-directory' in… 

    …to jghrefactor/A1-update-dockerfile
    @hollandjg
    hollandjg authored Oct 28, 2024
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  7. Merge branch 'jghrefactor/A1-update-dockerfile' of https://github.com… 

    …/WilhelmusLab/ice-floe-tracker-pipeline into jghrefactor/A1-update-dockerfile
    @hollandjg
    hollandjg committed Oct 28, 2024
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  8. delete .spacerc which shouldn't be in the repo

    @hollandjg
    hollandjg committed Oct 28, 2024
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Commits on Oct 29, 2024

  1. Merge branch 'jghrefactor/A-gather-julia-package-in-new-directory' in… 

    …to jghrefactor/A1-update-dockerfile
    @hollandjg
    hollandjg authored Oct 29, 2024
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  2. back-out changes made to soit 

    (moved to a different PR)
    @hollandjg
    hollandjg committed Oct 29, 2024
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  3. Merge branch 'jghrefactor/A1-update-dockerfile' of https://github.com… 

    …/WilhelmusLab/ice-floe-tracker-pipeline into jghrefactor/A1-update-dockerfile
    @hollandjg
    hollandjg committed Oct 29, 2024
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  4. add missing import

    @hollandjg
    hollandjg committed Oct 29, 2024
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  5. back-out removal of requirements.txt (moved to new PR)

    @hollandjg
    hollandjg committed Oct 29, 2024
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  6. remove requirements.txt (no longer used)

    @hollandjg
    hollandjg committed Oct 29, 2024
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  7. Revert "remove requirements.txt (no longer used)" 

    This reverts commit d1cb176.
    @hollandjg
    hollandjg committed Oct 29, 2024
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Commits on Oct 30, 2024

  1. Merge branch 'jghrefactor/D-update-conda-environment-setup' into jghr… 

    …efactor/A1-update-dockerfile
    @hollandjg
    hollandjg committed Oct 30, 2024
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  2. remove duplicate python setup package

    @hollandjg
    hollandjg committed Oct 30, 2024
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  3. use updated python setup package name in docker and workflows

    @hollandjg
    hollandjg committed Oct 30, 2024
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Commits on Nov 6, 2024

  1. add IFT from main branch rather than from registry for Docker build

    @tdivoll
    tdivoll committed Nov 6, 2024
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