Ci updates #131
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| name: Run integration tests | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| types: | |
| - opened | |
| - synchronize | |
| jobs: | |
| test: | |
| name: Test | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 5 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.10' | |
| # - name: Remove flash-attn dependency | |
| # run: | | |
| # sed -i '/flash-attn/d' environment.yml | |
| # - name: Remove conda-pack dependency | |
| # run: | | |
| # sed -i '/conda-pack/d' environment.yml | |
| # - name: Remove chemlactica dependency | |
| # run: | | |
| # sed -i '/chemlactica/d' environment.yml | |
| - name: Set up Conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| environment-file: test_environment.yml | |
| activate-environment: testenv | |
| - name: Install local chemlactica package within Conda environment | |
| run: | | |
| conda activate testenv # Activate the Conda environment | |
| pip install . # Install dependencies within the Conda environment | |
| conda deactivate # Deactivate the Conda environment after installation | |
| - name: Run unit tests | |
| run: | | |
| conda activate testenv # Activate the Conda environment | |
| python3 confirm_tests.py --run unit | |
| conda deactivate # Deactivate the Conda environment after installation | |
| - name: list commits on PR | |
| run: | | |
| response=$(curl --request GET \ | |
| --url 'https://api.github.com/repos/${{ github.repository }}/pulls/${{ github.event.pull_request.number }}/commits' \ | |
| --header 'Authorization: token ${{ secrets.GITHUB_TOKEN }}' \ | |
| --header 'Accept: application/vnd.github.v3+json' \ | |
| --header 'Content-Type: application/json') | |
| echo "$response" > response.json | |
| - name: get second last commit | |
| run: | | |
| echo "Get length of the array:" | |
| length=$(jq 'length' response.json) | |
| echo "Get index of the second last commit:" | |
| index=$(($length - 2)) | |
| latest_commit=$(jq --argjson index $index '.[$index]' response.json) | |
| echo "Get commit SHA of the latest commit:" | |
| COMMIT_HASH=$(echo "$latest_commit" | jq -r '.sha') | |
| echo "$COMMIT_HASH" | |
| - name: read integration test status | |
| run: | | |
| echo "getting test status" | |
| TEST_STATUS=$(cat test_status.yaml | grep "${COMMIT_HASH}" | cut -d ' ' -f 2|| echo "NOT FOUND") | |
| echo "$TEST_STATUS" | |
| - name: check test status | |
| run: | | |
| if [ ! $TEST_STATUS=="PASS" ]; then | |
| echo "error: The test_status.yaml file indicates a failure for the second-to-last commit or incorrect commit tested" | |
| exit 1 | |
| fi |