Prioritize accession number over specimen ID in CDPH records as reque…

…sted.
Zymo-Research · Jul 21, 2020 · d47fb61 · d47fb61
1 parent bbfec81
commit d47fb61
Showing 1 changed file with 7 additions and 2 deletions.
diff --git a/zymoTransmitSupport/inputOutput/caResultReader.py b/zymoTransmitSupport/inputOutput/caResultReader.py
@@ -87,8 +87,13 @@ def __init__(self, rawLine: [str, collections.Iterable], delimiter: str = "\t"):
          self.resultCode,
          self.unused
          ) = self.elementArray
-        if not self.specimenID:
-            self.specimenID = self.accession
+        if self.accession:
+            if self.specimenID:
+                holder = self.specimenID
+                self.specimenID = self.accession
+                self.accession = holder
+            else:
+                self.specimenID = self.accession
         self.patientDateOfBirth = self.processDateAndTime(patientDateOfBirth, "")
         self.collectionDateTime = self.processDateAndTime(collectionDate, "")
         self.reportedDateTime = self.processDateAndTime(reportedDateAndTime, "")