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alleleCount
alleleCount PublicForked from cancerit/alleleCount
Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings)
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ichorCNA
ichorCNA PublicForked from broadinstitute/ichorCNA
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
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MethylDackel
MethylDackel PublicForked from dpryan79/MethylDackel
A (mostly) universal methylation extractor for BS-seq experiments.
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