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@ablab

Ex Center for Algorithmic Biotechnology

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  1. spades spades Public

    SPAdes Genome Assembler

    C++ 765 139

  2. quast quast Public

    Genome assembly evaluation tool

    AMPL 410 78

Repositories

Showing 10 of 30 repositories
  • IsoQuant Public

    Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

    ablab/IsoQuant’s past year of commit activity
    Python 153 14 41 2 Updated Dec 2, 2024
  • quast-website Public

    Django web interface for Quast assembly assessment tool: https://github.com/ablab/quast

    ablab/quast-website’s past year of commit activity
    HTML 5 2 0 0 Updated Nov 14, 2024
  • quast Public

    Genome assembly evaluation tool

    ablab/quast’s past year of commit activity
    AMPL 410 78 73 2 Updated Nov 14, 2024
  • spades Public

    SPAdes Genome Assembler

    ablab/spades’s past year of commit activity
    C++ 765 139 252 4 Updated Nov 6, 2024
  • rnaquast Public

    Quality assessment of de novo transcriptome assemblies from RNA-Seq data

    ablab/rnaquast’s past year of commit activity
    Python 19 6 8 0 Updated Oct 25, 2024
  • nerpa Public
    ablab/nerpa’s past year of commit activity
    C++ 15 3 0 3 Updated Mar 15, 2024
  • metarna Public
    ablab/metarna’s past year of commit activity
    Python 0 0 0 2 Updated Jul 6, 2023
  • orf-search Public

    ORF search on assembly graphs

    ablab/orf-search’s past year of commit activity
    Python 6 3 0 0 Updated Apr 12, 2023
  • metaGT Public

    Pipeline for metagenome and metatranscriptome joint assembly

    ablab/metaGT’s past year of commit activity
    Nextflow 19 MIT 2 2 0 Updated Mar 3, 2023
  • VerityMap Public
    ablab/VerityMap’s past year of commit activity
    C++ 31 GPL-3.0 5 9 1 Updated Feb 22, 2023
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