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build: update conda dependencies
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elkoz committed Nov 15, 2023
1 parent 6835a5a commit e86ed1c
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Showing 4 changed files with 139 additions and 10 deletions.
6 changes: 2 additions & 4 deletions .conda/arm64/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -25,7 +25,7 @@ requirements:
- wheel
- setuptools
run:
- numpy>=1.17
- numpy>=1.21,<1.25
- editdistance>=0.6.0
- Biopython==1.79
- click>=8.1.3
Expand All @@ -44,9 +44,7 @@ requirements:
- pyyaml
- rdkit
- pypdb
- prody


- joblib

about:
home: https://github.com/adaptyvbio/ProteinFlow
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14 changes: 8 additions & 6 deletions .conda/default/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -25,26 +25,28 @@ requirements:
- wheel
- setuptools
run:
- numpy>=1.17
- numpy>=1.21,<1.25
- editdistance>=0.6.0
- Biopython==1.79
- click>=8.1.3
- biopandas>=0.4.1
- boto3==1.24.59
- boto3=
- p-tqdm
- networkx==2.8.8
- einops
- pandas
- pytorch>=1.10.0
- biotite==0.35.0
- aiobotocore==2.4.2
- awscli==1.25.60
- aiobotocore
- awscli
- bs4
- rcsbsearch
- tmtools
- fair-esm
- mmseqs2
- foldseek
- pyyaml
- rdkit
- pypdb
- joblib

about:
home: https://github.com/adaptyvbio/ProteinFlow
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39 changes: 39 additions & 0 deletions channeldata.json
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@@ -0,0 +1,39 @@
{
"channeldata_version": 1,
"packages": {
"proteinflow": {
"activate.d": false,
"binary_prefix": false,
"deactivate.d": false,
"description": null,
"dev_url": "https://github.com/adaptyvbio/ProteinFlow",
"doc_source_url": null,
"doc_url": "https://adaptyvbio.github.io/ProteinFlow/",
"home": "https://github.com/adaptyvbio/ProteinFlow",
"icon_hash": null,
"icon_url": null,
"identifiers": null,
"keywords": null,
"license": "BSD-3-Clause",
"post_link": false,
"pre_link": false,
"pre_unlink": false,
"recipe_origin": null,
"run_exports": {},
"source_git_url": "https://github.com/adaptyvbio/ProteinFlow.git",
"source_url": null,
"subdirs": [
"linux-64"
],
"summary": "Versatile pipeline for processing protein structure data for deep learning applications.",
"tags": null,
"text_prefix": true,
"timestamp": 1700064405,
"version": "2.4.1"
}
},
"subdirs": [
"linux-64",
"noarch"
]
}
90 changes: 90 additions & 0 deletions index.html
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@@ -0,0 +1,90 @@
<html>
<head>
<title>proteinflow</title>
<style type="text/css">
a, a:active {
text-decoration: none; color: blue;
}
a:visited {
color: #48468F;
}
a:hover, a:focus {
text-decoration: underline; color: red;
}
body {
background-color: #F5F5F5;
}
h2 {
margin-bottom: 12px;
}
th, td {
font: 100% monospace; text-align: left;
}
th {
font-weight: bold; padding-right: 14px; padding-bottom: 3px;
}
th.tight {
padding-right: 6px;
}
td {
padding-right: 14px;
}
td.tight {
padding-right: 8px;
}
td.s, th.s {
text-align: right;
}
td.summary {
white-space: nowrap;
overflow: hidden;
}
td.packagename {
white-space: nowrap;
text-overflow: ellipsis;
overflow: hidden;
max-width: 180px;
padding-right: 8px;
}
td.version {
//white-space: nowrap;
overflow: hidden;
max-width: 90px;
padding-right: 8px;
}
table {
background-color: white;
border-top: 1px solid #646464;
border-bottom: 1px solid #646464;
padding-top: 10px;
padding-bottom: 14px;
}
address {
color: #787878;
padding-top: 10px;
}
</style>
</head>
<body>
<h2>proteinflow</h2>
<h3><a href="rss.xml">RSS Feed</a>&nbsp;&nbsp;&nbsp;<a href="channeldata.json">channeldata.json</a></h3>
<a href="linux-64">linux-64</a>&nbsp;&nbsp;&nbsp;<a href="noarch">noarch</a>&nbsp;&nbsp;&nbsp; <table>
<tr>
<th style="padding-right:18px;">Package</th>
<th>Latest Version</th>
<th>Doc</th>
<th>Dev</th>
<th>License</th>
<th class="tight">linux-64</th><th class="tight">noarch</th> <th>Summary</th>
</tr>
<tr>
<td class="packagename"><a href="https://github.com/adaptyvbio/ProteinFlow" alt="proteinflow">proteinflow</a></td>
<td class="version">2.4.1</td>
<td><a href="https://adaptyvbio.github.io/ProteinFlow/">doc</a></td>
<td><a href="https://github.com/adaptyvbio/ProteinFlow">dev</a></td>
<td class="tight">BSD-3-Clause</td>
<td>X</td><td></td> <td class="summary">Versatile pipeline for processing protein structure data for deep...</td>
</tr> </table>
<address>Updated: 2023-11-15 16:08:06 +0000 - Files: 1</address>
</body>
</html>

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