Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

feat: Add public dataset GazeOnFaces #567

Merged
merged 17 commits into from
Sep 22, 2023
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
11 changes: 11 additions & 0 deletions docs/source/bibliography.bib
Original file line number Diff line number Diff line change
Expand Up @@ -65,3 +65,14 @@ @article{GazeBaseVR
journal = {Scientific Data},
doi = {10.1038/s41597-023-02075-5},
}

@article{GazeOnFaces,
title={Face exploration dynamics differentiate men and women},
author={Coutrot, Antoine and Binetti, Nicola and Harrison, Charlotte and Mareschal, Isabelle and Johnston, Alan},
journal={Journal of vision},
volume={16},
number={14},
pages={16--16},
year={2016},
publisher={The Association for Research in Vision and Ophthalmology}
}
3 changes: 3 additions & 0 deletions src/pymovements/datasets/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -27,6 +27,7 @@

pymovements.datasets.GazeBase
pymovements.datasets.GazeBaseVR
pymovements.datasets.GazeOnFaces
prassepaul marked this conversation as resolved.
Show resolved Hide resolved
pymovements.datasets.JuDo1000


Expand All @@ -39,6 +40,7 @@
pymovements.datasets.ToyDataset
pymovements.datasets.ToyDatasetEyeLink
"""
from pymovements.datasets.gaze_on_faces import GazeOnFaces
from pymovements.datasets.gazebase import GazeBase
from pymovements.datasets.gazebasevr import GazeBaseVR
from pymovements.datasets.judo1000 import JuDo1000
Expand All @@ -49,6 +51,7 @@
__all__ = [
'GazeBase',
'GazeBaseVR',
'GazeOnFaces',
prassepaul marked this conversation as resolved.
Show resolved Hide resolved
'JuDo1000',
'ToyDataset',
'ToyDatasetEyeLink',
Expand Down
149 changes: 149 additions & 0 deletions src/pymovements/datasets/gaze_on_faces.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,149 @@
# Copyright (c) 2022-2023 The pymovements Project Authors
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in all
# copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
# SOFTWARE.
"""This module provides an interface to the GazeOnFaces dataset."""
from __future__ import annotations

from dataclasses import dataclass
from dataclasses import field
from typing import Any

import polars as pl

from pymovements.dataset.dataset_definition import DatasetDefinition
from pymovements.dataset.dataset_library import register_dataset
from pymovements.gaze.experiment import Experiment


@dataclass
@register_dataset
class GazeOnFaces(DatasetDefinition):
"""GazeBaseVR dataset :cite:p:`GazeOnFaces`.

This dataset includes monocular eye tracking data from single participants in a single
session. Eye movements are recorded at a sampling frequency of 60 Hz
using an EyeLink 1000 video-based eye tracker and are provided as pixel coordinates.

Participants were sat 57 cm away from the screen (19inch LCD monitor,
screen res=1280×1024, 60 Hz). Recordings of the eye movements of one eye in monocular
pupil/corneal reflection tracking mode.

Check the respective paper for details :cite:p:`GazeOnFaces`.

Attributes
----------
name : str
The name of the dataset.

mirrors : tuple[str, ...]
A tuple of mirrors of the dataset. Each entry must be of type `str` and end with a '/'.

resources : tuple[dict[str, str], ...]
A tuple of dataset resources. Each list entry must be a dictionary with the following keys:
- `resource`: The url suffix of the resource. This will be concatenated with the mirror.
- `filename`: The filename under which the file is saved as.
- `md5`: The MD5 checksum of the respective file.

experiment : Experiment
The experiment definition.

filename_format : str
Regular expression which will be matched before trying to load the file. Namedgroups will
appear in the `fileinfo` dataframe.

filename_format_dtypes : dict[str, type], optional
If named groups are present in the `filename_format`, this makes it possible to cast
specific named groups to a particular datatype.

column_map : dict[str, str]
The keys are the columns to read, the values are the names to which they should be renamed.

custom_read_kwargs : dict[str, Any], optional
If specified, these keyword arguments will be passed to the file reading function.

Examples
--------
Initialize your :py:class:`~pymovements.PublicDataset` object with the
:py:class:`~pymovements.GazeOnFaces` definition:

>>> import pymovements as pm
>>>
>>> dataset = pm.Dataset("GazeOnFaces", path='data/GazeOnFaces')

Download the dataset resources resources:

>>> dataset.download()# doctest: +SKIP

Load the data into memory:

>>> dataset.load()# doctest: +SKIP
"""

# pylint: disable=similarities
# The PublicDatasetDefinition child classes potentially share code chunks for definitions.

name: str = 'GazeOnFaces'

mirrors: tuple[str, ...] = (
'https://uncloud.univ-nantes.fr/index.php/s/',
)

resources: tuple[dict[str, str], ...] = (
{
'resource': '8KW6dEdyBJqxpmo/download?path=%2F&files=gaze_csv.zip',
'filename': 'gaze_csv.zip',
'md5': 'fe219f07c9253cd9aaee6bd50233c034',
},
)

experiment: Experiment = Experiment(
screen_width_px=1280,
screen_height_px=1024,
screen_width_cm=38,
screen_height_cm=30,
distance_cm=57,
origin='center',
sampling_rate=60,
)

filename_format: str = r'gaze_sub{sub_id:d}_trial{trial_id:d}.csv'

filename_format_dtypes: dict[str, type] = field(
default_factory=lambda: {
'sub_id': int,
'trial_id': int,
},
)

trial_columns: list[str] = field(default_factory=lambda: ['sub_id', 'trial_id'])

time_column: Any = None

pixel_columns: list[str] = field(default_factory=lambda: ['x', 'y'])

column_map: dict[str, str] = field(default_factory=lambda: {})

custom_read_kwargs: dict[str, Any] = field(
default_factory=lambda: {
'separator': ',',
'has_header': False,
'new_columns': ['x', 'y'],
'dtypes': [pl.Float32, pl.Float32],
},
)
2 changes: 2 additions & 0 deletions tests/datasets/datasets_test.py
Original file line number Diff line number Diff line change
Expand Up @@ -31,6 +31,7 @@
pytest.param(pm.datasets.ToyDataset, 'ToyDataset', id='ToyDataset'),
pytest.param(pm.datasets.GazeBase, 'GazeBase', id='GazeBase'),
pytest.param(pm.datasets.GazeBaseVR, 'GazeBaseVR', id='GazeBaseVR'),
pytest.param(pm.datasets.GazeOnFaces, 'GazeOnFaces', id='GazeOnFaces'),
pytest.param(pm.datasets.JuDo1000, 'JuDo1000', id='JuDo1000'),
],
)
Expand All @@ -46,6 +47,7 @@ def test_public_dataset_registered(definition_class, dataset_name):
pytest.param(pm.datasets.ToyDataset, id='ToyDataset'),
pytest.param(pm.datasets.GazeBase, id='GazeBase'),
pytest.param(pm.datasets.GazeBaseVR, id='GazeBaseVR'),
pytest.param(pm.datasets.GazeOnFaces, id='GazeOnFaces'),
pytest.param(pm.datasets.JuDo1000, id='JuDo1000'),
],
)
Expand Down
79 changes: 79 additions & 0 deletions tests/datasets/gaze_on_faces_test.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,79 @@
# Copyright (c) 2023 The pymovements Project Authors
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in all
# copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
# SOFTWARE.
"""Test all functionality in pymovements.dataset.gaze_on_faces."""
from pathlib import Path

import pytest

import pymovements as pm


@pytest.mark.parametrize(
'init_path, expected_paths',
[
pytest.param(
'/data/set/path',
{
'root': Path('/data/set/path/'),
'dataset': Path('/data/set/path/'),
'download': Path('/data/set/path/downloads'),
},
),
pytest.param(
pm.DatasetPaths(root='/data/set/path'),
{
'root': Path('/data/set/path/'),
'dataset': Path('/data/set/path/GazeOnFaces'),
'download': Path('/data/set/path/GazeOnFaces/downloads'),
},
),
pytest.param(
pm.DatasetPaths(root='/data/set/path', dataset='.'),
{
'root': Path('/data/set/path/'),
'dataset': Path('/data/set/path/'),
'download': Path('/data/set/path/downloads'),
},
),
pytest.param(
pm.DatasetPaths(root='/data/set/path', dataset='dataset'),
{
'root': Path('/data/set/path/'),
'dataset': Path('/data/set/path/dataset'),
'download': Path('/data/set/path/dataset/downloads'),
},
),
pytest.param(
pm.DatasetPaths(root='/data/set/path', downloads='custom_downloads'),
{
'root': Path('/data/set/path/'),
'dataset': Path('/data/set/path/GazeOnFaces'),
'download': Path('/data/set/path/GazeOnFaces/custom_downloads'),
},
),
],
)
def test_paths(init_path, expected_paths):
dataset = pm.Dataset(pm.datasets.GazeOnFaces, path=init_path)

assert dataset.paths.root == expected_paths['root']
assert dataset.path == expected_paths['dataset']
assert dataset.paths.dataset == expected_paths['dataset']
assert dataset.paths.downloads == expected_paths['download']