fb-osmose-bridge

generates OSMOSE configuration files from data sources like Fishbase and SeaLifeBase

Usage

1. download OSMOSE 3 update 2 from http://www.osmose-model.org/downloads
2. expand to [OSMOSE_INSTALL_DIR]
3. download OSMOSE configuration at https://fbob.herokuapp.com/osmose_config.zip (static configuration) or https://fbob.herokuapp.com/osmose_config.zip?htlGroupName=ScomberomorusCavalla&htlGroupName=LutjanusCampechanus&htlGroupName=EpinephelusMorio (dynamic configuration with three named groups: Scomberomorus cavalla, Lutjanus campechanus and Epinephelus morio.).
4. expand config.zip to [SOME_DIR]
5. open a terminal and go to directory [OSMOSE_INSTALL_DIR]/dist
6. run OSMOSE simulation using java -jar osmose_stable_3.jar [SOME_DIR]/osm_all-parameters.csv . in the OSMOSE install directory

The output should look something like:

osmose[info] - *********************************
osmose[info] - Osmose model - Copyright 2013 IRD
osmose[info] - *********************************
osmose[info] - Osmose version Osmose 3 Update 2 (2015/03/01)
osmose[info] - Running configuration /Volumes/Data/Users/unencrypted/jorrit/Downloads/osmose_config/osm_all-parameters.csv
osmose[info] - Loading parameters from file /Volumes/Data/Users/unencrypted/jorrit/Downloads/osmose_config/osm_all-parameters.csv
osmose[info] -   Loading parameters from file /Volumes/Data/Users/unencrypted/jorrit/Downloads/osmose_config/osm_param-output.csv