Pytest #1

	---
	name: Pytest
	on: [pull_request,workflow_dispatch]

	jobs:
	build-linux:
	runs-on: ubuntu-latest
	strategy:
	max-parallel: 5
	defaults:
	run:
	shell: bash -el {0}

	steps:
	- name: Remove docs before testing
	run: rm -rf /github/workspace/docs

	- name: Remove tutorials before testing
	run: rm -rf /github/workspace/tutorials

	- name: Remove archived code before testing
	run: rm -rf /github/workspace/src/archive

	- name: Fetch actions (v2)
	uses: actions/checkout@v2

	- name: Setup Conda
	uses: conda-incubator/setup-miniconda@v2
	with:
	environment-file: requirements/testing.yml
	activate-environment: test
	auto-activate-base: false

	- name: Conda info
	run: \|
	conda info
	conda list

	- name: Lint with flake8
	run: \|
	# activate the test environment
	conda activate test
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor
	# is 127 chars wide
	flake8 . --count --exit-zero --max-complexity=10 \
	--max-line-length=127 --statistics

	- name: Test with pytest
	run: \|
	conda activate test
	pytest --cov-config=.coveragerc \
	--cov=src --cov-report xml \
	src/

	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v3
	with:
	token: ${{ secrets.CODECOV_TOKEN }}
	env_vars: OS,PYTHON
	verbose: true

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