Merge pull request #36 from alwinw/rc0.9.5

Added sample data and examples

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: epocakir
 Title: Clinical Coding of Patients with Kidney Disease using Clinical Practice
     Guidelines
-Version: 0.9.0
+Version: 0.9.5
 Authors@R:
     c(person(given = "Alwin",
              family = "Wang",

LICENSE

@@ -1,6 +1,6 @@
 # MIT License
 
-Copyright (c) 2020 Alwin Wang, Lisa Toh
+Copyright (c) 2021 Alwin Wang, Lisa Toh
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

NAMESPACE

@@ -1,50 +1,50 @@
 # Generated by roxygen2: do not edit by hand
 
-S3method(Albuminuria_staging_ACR,default)
+S3method(Albuminuria_staging_ACR,data.frame)
 S3method(Albuminuria_staging_ACR,numeric)
 S3method(Albuminuria_staging_ACR,units)
-S3method(Albuminuria_staging_AER,default)
+S3method(Albuminuria_staging_AER,data.frame)
 S3method(Albuminuria_staging_AER,numeric)
 S3method(Albuminuria_staging_AER,units)
-S3method(GFR_staging,default)
+S3method(GFR_staging,data.frame)
 S3method(GFR_staging,numeric)
 S3method(GFR_staging,units)
-S3method(aki,default)
-S3method(aki,numeric)
-S3method(aki,units)
-S3method(aki_SCr,default)
+S3method(aki_SCr,data.frame)
 S3method(aki_SCr,numeric)
 S3method(aki_SCr,units)
-S3method(aki_UO,default)
+S3method(aki_UO,data.frame)
 S3method(aki_UO,numeric)
 S3method(aki_UO,units)
-S3method(aki_bCr,default)
+S3method(aki_bCr,data.frame)
 S3method(aki_bCr,numeric)
 S3method(aki_bCr,units)
-S3method(anemia,default)
+S3method(aki_staging,data.frame)
+S3method(aki_staging,numeric)
+S3method(aki_staging,units)
+S3method(anemia,data.frame)
 S3method(anemia,numeric)
 S3method(anemia,units)
 S3method(combn_changes,POSIXct)
-S3method(combn_changes,default)
-S3method(eGFR,default)
+S3method(combn_changes,data.frame)
+S3method(eGFR,data.frame)
 S3method(eGFR,numeric)
 S3method(eGFR,units)
-S3method(eGFR_adult_SCr,default)
+S3method(eGFR_adult_SCr,data.frame)
 S3method(eGFR_adult_SCr,numeric)
 S3method(eGFR_adult_SCr,units)
-S3method(eGFR_adult_SCr_SCysC,default)
+S3method(eGFR_adult_SCr_SCysC,data.frame)
 S3method(eGFR_adult_SCr_SCysC,numeric)
 S3method(eGFR_adult_SCr_SCysC,units)
-S3method(eGFR_adult_SCysC,default)
+S3method(eGFR_adult_SCysC,data.frame)
 S3method(eGFR_adult_SCysC,numeric)
 S3method(eGFR_adult_SCysC,units)
-S3method(eGFR_child_SCr,default)
+S3method(eGFR_child_SCr,data.frame)
 S3method(eGFR_child_SCr,numeric)
 S3method(eGFR_child_SCr,units)
-S3method(eGFR_child_SCr_BUN,default)
+S3method(eGFR_child_SCr_BUN,data.frame)
 S3method(eGFR_child_SCr_BUN,numeric)
 S3method(eGFR_child_SCr_BUN,units)
-S3method(eGFR_child_SCysC,default)
+S3method(eGFR_child_SCysC,data.frame)
 S3method(eGFR_child_SCysC,numeric)
 S3method(eGFR_child_SCysC,units)
 export("%>%")
@@ -53,10 +53,11 @@ export(Albuminuria_staging_ACR)
 export(Albuminuria_staging_AER)
 export(GFR_stages)
 export(GFR_staging)
-export(aki)
 export(aki_SCr)
 export(aki_UO)
 export(aki_bCr)
+export(aki_stages)
+export(aki_staging)
 export(anemia)
 export(as_metric)
 export(binary2factor)
@@ -72,4 +73,3 @@ export(eGFR_child_SCr_BUN)
 export(eGFR_child_SCysC)
 importFrom(magrittr,"%>%")
 importFrom(rlang,.data)
-importFrom(rlang,`:=`)

R/Txp-recipient.R

@@ -1,2 +1 @@
-# ?additional conversion factors
 # NULL