Skip to content

v0.1.0
Compare
Choose a tag to compare
@andreped andreped released this 02 Sep 20:11
· 70 commits to main since this release
v0.1.0
8d96995
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Learn about vigilant mode.

Summary

First stable release of the vsi2tif command line tool for WSI conversion.

The tool allows for seamless conversion of WSis from the Olympus cellSens VSI format to Generic TIFF, which is a format compatible with commonly used packages for WSI processing, such as OpenSlide, FAST, and cuCUM.

What's Changed

  • major rework - see mini changelog inside vsi2tif.py by @sekro in #1
  • Fixed bug: Error when spaces present in filepath by @smistad in #2
  • Quick fix to make compression of final image work by @sekro in #3
  • Reimplemented tool into a python CLI by @andreped in #5
  • Added single and batch conversion support by @andreped in #6
  • Implemented linting shell scripts and CI workflow by @andreped in #7
  • Implemented build and test CI for python CLI by @andreped in #8
  • Fixed single wsi conversion; updated documentations by @andreped in #9
  • Added support to set CLI verbosity by @andreped in #10

New Contributors

Full Changelog: https://github.com/andreped/vsi2tif/commits/v0.1.0

Contributors

smistad, sekro, and andreped
Assets 3
Loading