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property count corrections and other small improvements
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KonradHoeffner committed Jan 29, 2024
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13 changes: 6 additions & 7 deletions paper.tex
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Expand Up @@ -375,17 +375,16 @@ \subsection{Methodology}\label{sec:methodology}
In addition to an explicit textual definition of the category \enquote{Bone compound}, for example, we introduced the following axiom:
%
%\anno{BoneCompound}: \aurl{rdfs}{subClassOf} (\aurl{gfo}{hasPart} some (\anno{Bone} or \anno{BoneCompound} or \anno{BonePart}))
\todo{KH: Ich bin nicht so der description logics Experte, Alex kannst du mal gucken ob ich das richtig formuliert habe?}
\begin{equation*}
\anno{BoneCompound} \sqsubseteq \exists \aurl{gfo}{hasPart}.(\anno{Bone} \sqcup \anno{BoneCompound} \sqcup \anno{BonePart})
\anno{BoneCompound} \sqsubseteq \exists \gfo{hasPart}.(\anno{Bone} \sqcup \anno{BoneCompound} \sqcup \anno{BonePart})
\end{equation*}
%
This axiom states that a bone compound consists of further bone compounds, individual bones or bone parts.
Another example axiom postulates that phenotypes can be derived from anatomical entities or anatomical properties:
%
%\anno{Phenotype}: \aurl{rdfs}{subClassOf} (\aurl{gfo}{derivedFrom} some (\anno{AnatomicalEntity} or \anno{AnatomicalProperty}))
\begin{equation*}
\anno{Phenotype} \sqsubseteq \exists \aurl{gfo}{derivedFrom}.(\anno{AnatomicalEntity} \sqcup \anno{AnatomicalProperty})
\anno{Phenotype} \sqsubseteq \exists \gfo{derivedFrom}.(\anno{AnatomicalEntity} \sqcup \anno{AnatomicalProperty})
\end{equation*}
%
Finally, a spreadsheet template was developed for domain experts to specify domain-specific entities (ANNOds), strictly compliant with ANNOdc, see \cref{sec:annodc}.
Expand All @@ -398,7 +397,7 @@ \subsection{Methodology}\label{sec:methodology}
such as \enquote{Bone}, \enquote{Bone part}, \enquote{Bone compound}, \enquote{Tooth}, \enquote{Tooth part}, \enquote{Phenotype}, \enquote{Relative anatomical location}, \enquote{Anatomical line} and \enquote{Anatomical point}),
and relation types (such as hasPart, boundaryOf, locationOf and derivedFrom) of ANNOdc were utilised and their subcategories and specific relations were dynamically queried (according to the three-ontology method).

The statistical information on the ANNO ontology is shown in Table 1.
The statistical information on the ANNO ontology is shown in \cref{tab:stats}.

\begin{table}[b]
\centering
Expand All @@ -409,10 +408,10 @@ \subsection{Methodology}\label{sec:methodology}
% Expressivity according to Protege: ANNOdc and combined: ALCHIQ(D), ANNOds: ALE
Ontology &\textnormal{Classes} &\textnormal{Object prop.} &\textnormal{Data p.} &\textnormal{Individuals} &\textnormal{Annotation p.} &\textnormal{Axioms} &\textnormal{FMA links} &\textnormal{TA links} &Expressivity\\
\midrule
ANNOdc &41 &18 &1 &0 &19 &178 &11 &0 &OWL DL\\
ANNOds &1166 &11 &0 &803 &43 &18231 &503 &206 &OWL DL\\
ANNOdc &41 &11 &1 &0 &19 &178 &11 &0 &OWL DL\\
ANNOds &1166 &0 &0 &803 &43 &18231 &503 &206 &OWL DL\\
\midrule
combined &1195 &21 &1 &803 &53 &18382 &514 &206 &OWL DL\\
combined &1195 &11 &1 &803 &53 &18382 &514 &206 &OWL DL\\
\bottomrule
\end{tabulary}
\end{table}
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