Environment.yml #25

	name: aodn_cloud_optimised mamba

	on:
	push:
	branches: [ main ]
	pull_request:
	branches: [ main ]

	jobs:
	build-linux:
	runs-on: ubuntu-latest
	defaults:
	run:
	shell: bash -el {0}

	steps:
	- uses: actions/checkout@v4
	with:
	submodules: 'true'

	- name: Set up Miniconda
	uses: conda-incubator/setup-miniconda@v3
	with:
	activate-environment: AodnCloudOptimised
	environment-file: environment.yml

	- name: Install dependencies
	shell: bash -el {0}
	run: \|
	conda install --yes mamba
	mamba env update --name AodnCloudOptimised --file environment.yml

	- name: Activate Conda environment
	shell: bash -el {0}
	run: \|
	conda init
	conda activate AodnCloudOptimised

	- name: Run pytest and coverage
	run: \|
	pytest
	coverage run -m pytest
	coverage report --fail-under=60
	coverage xml -o coverage.xml

	- name: Upload coverage report
	uses: actions/upload-artifact@v2
	with:
	name: coverage-report
	path: coverage.xml

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