Update for release #1158
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name: CI Tests | |
on: | |
push: | |
branches: | |
- main | |
paths-ignore: | |
- 'mkdocs.yml' | |
- 'docs/**' | |
pull_request: {} | |
jobs: | |
lint: | |
runs-on: ubuntu-latest | |
timeout-minutes: 5 | |
steps: | |
- uses: actions/checkout@v3 | |
- name: set up python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: 3.9 | |
- name: Install Balsam | |
run: | | |
make install-dev | |
pip freeze | |
- name: Lint | |
run: make lint | |
- name: Check default Site settings.yml files | |
run: make validate-defaults | |
- name: Mypy (type checking) | |
run: make mypy | |
test-linux: | |
name: Testing with Python${{ matrix.python-version }} on Ubuntu | |
needs: lint | |
runs-on: ubuntu-latest | |
services: | |
postgres: | |
# Docker Hub image | |
image: postgres | |
env: | |
POSTGRES_PASSWORD: postgres | |
POSTGRES_DB: balsam-test | |
# Set health checks to wait until postgres has started | |
options: >- | |
--health-cmd pg_isready | |
--health-interval 10s | |
--health-timeout 5s | |
--health-retries 5 | |
ports: | |
# Maps tcp port 5432 on service container to the host | |
- 5432:5432 | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: ['3.7', '3.8', '3.9', '3.10'] | |
env: | |
PYTHON: ${{ matrix.python-version }} | |
OS: ubuntu | |
BALSAM_TEST_DB_URL: postgresql://postgres:postgres@localhost:5432/balsam-test | |
PYTHONUNBUFFERED: 1 | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python env | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install mpich | |
run: sudo apt-get update && sudo apt-get install -y -q libmpich-dev | |
- name: Install Balsam | |
run: | | |
make install-dev | |
pip freeze | |
- name: tests | |
run: make testcov | |
- name: Archive test logs | |
uses: actions/upload-artifact@v3 | |
if: failure() | |
with: | |
name: test-logs | |
path: pytest-logs/ | |
- run: coverage xml | |
- uses: codecov/codecov-action@v3.1.1 | |
with: | |
files: ./coverage.xml | |
env_vars: PYTHON,OS |