Pandas wrapper #1120
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| # SPDX-FileCopyrightText: ASSUME Developers | |
| # | |
| # SPDX-License-Identifier: AGPL-3.0-or-later | |
| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
| name: Tests | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| jobs: | |
| jupyter: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: 'pip' | |
| cache-dependency-path: '**/pyproject.toml' | |
| - name: Run Jupyter notebooks | |
| run: | | |
| pip install -e . | |
| pip install jupyter | |
| cd examples/notebooks | |
| jupyter nbconvert --to notebook --execute --ExecutePreprocessor.timeout=60 --output output.ipynb 01_minimal_manual_example.ipynb | |
| jupyter nbconvert --to notebook --execute --ExecutePreprocessor.timeout=60 --output output.ipynb 02_automated_run_example.ipynb | |
| jupyter nbconvert --to notebook --execute --ExecutePreprocessor.timeout=60 --output output.ipynb 03_custom_unit_example.ipynb | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: 'pip' | |
| cache-dependency-path: '**/pyproject.toml' | |
| - name: Check reuse compliance | |
| run: | | |
| pip install reuse | |
| reuse lint | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| python -m pip install -e .[test] | |
| - name: Lint with ruff | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| ruff check assume examples tests | |
| ruff format assume examples tests | |
| - name: Test with pytest & integration tests | |
| run: | | |
| pytest -m "not require_learning" | |
| - name: Install torch dependencies | |
| run: | | |
| python -m pip install -e .[learning] | |
| - name: Test pytest with torch & integration tests | |
| run: | | |
| pytest --cov --cov-report=xml --junitxml="result.xml" | |
| - name: Upload tests results | |
| uses: actions/upload-artifact@v4 | |
| if: always() | |
| with: | |
| name: test-results-${{ matrix.python-version }} | |
| path: | | |
| coverage.xml | |
| result.xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| with: | |
| flags: pytest |