Transformed two vignettes into articles.

.Rbuildignore

@@ -10,3 +10,4 @@
 ^_pkgdown\.yml$
 ^docs$
 ^pkgdown$
+^vignettes/articles$

NEWS.md

@@ -4,8 +4,8 @@
 * Median and mean centroid types are now defined on the union of individual grids;
 * Simplified `caps` class to avoid storing objects multiple times under different names;
 * Added vignette on initialization strategies for k-means;
-* Added vignette on use case about the Berkeley growth study;
-* Added vignette on supported input formats.
+* Added article on use case about the Berkeley growth study;
+* Added article on supported input formats.
 
 # fdacluster 0.2.2
 

cran-comments.md

@@ -1,3 +1,9 @@
+## Resubmission
+
+This is a resubmission in which I:
+
+* Moved two vignettes in articles (only available on website) to reduce package size to meet CRAN requirements.
+
 ## Test environments
 * local macOS R installation, R 4.3.1
 * continuous integration via GH actions:

vignettes/hclust.Rmd → vignettes/articles/hierarchial-clustering.Rmd

@@ -1,10 +1,5 @@
 ---
-title: "Hierarchical agglomerative clustering"
-output: rmarkdown::html_vignette
-vignette: >
-  %\VignetteIndexEntry{Hierarchical agglomerative clustering}
-  %\VignetteEngine{knitr::rmarkdown}
-  %\VignetteEncoding{UTF-8}
+title: "Hierarchical clustering"
 ---
 
 ```{r, include = FALSE}

vignettes/input-formats.Rmd → vignettes/articles/input-formats.Rmd

@@ -1,10 +1,5 @@
 ---
 title: "Supported input formats"
-output: rmarkdown::html_vignette
-vignette: >
-  %\VignetteIndexEntry{Input formats}
-  %\VignetteEngine{knitr::rmarkdown}
-  %\VignetteEncoding{UTF-8}
 bibliography: references.bib
 ---
 

vignettes/articles/references.bib

@@ -0,0 +1,110 @@
+@book{ramsay2005functional,
+	author = {Ramsay, J. and Silverman, B.W.},
+	isbn = {978-0-387-40080-8},
+	lccn = {2005923773},
+	publisher = {Springer},
+	series = {Springer {Series} in {Statistics}},
+	title = {Functional {Data} {Analysis}},
+	year = {2005}
+}
+
+@article{sangalli2010k,
+  title={K-mean alignment for curve clustering},
+  author={Sangalli, L.M. and Secchi, P. and Vantini, S. and Vitelli, V.},
+  journal={Computational Statistics \& Data Analysis},
+  volume={54},
+  number={5},
+  pages={1219--1233},
+  year={2010},
+  doi={10.1016/j.csda.2009.12.008}
+}
+
+@article{vantini2012on,
+	author = {Vantini, S.},
+	doi = {10.1007/s11749-011-0268-9},
+	journal = {Test},
+	number = {4},
+	pages = {676--696},
+	title = {On the definition of phase and amplitude variability in functional data analysis},
+	volume = {21},
+	year = {2012}
+}
+
+@article{marron2015functional,
+  title={Functional data analysis of amplitude and phase variation},
+  author={Marron, J.S. and Ramsay, J.O. and Sangalli, L.M. and Srivastava, A.},
+  journal={Statistical Science},
+  pages={468--484},
+  year={2015},
+  doi={10.1214/15-STS524}
+}
+
+@article{marron2014statistics,
+  title={Statistics of time warpings and phase variations},
+  author={Marron, J.S. and Ramsay, J.O. and Sangalli, L.M. and Srivastava, A.},
+  year={2014}
+}
+
+@article{tucker2013generative,
+  title={Generative models for functional data using phase and amplitude separation},
+  author={Tucker, J.D. and Wu, W. and Srivastava, A.},
+  journal={Computational Statistics \& Data Analysis},
+  volume={61},
+  pages={50--66},
+  year={2013},
+  doi={10.1016/j.csda.2012.12.001}
+}
+
+@inproceedings{arthur2007k,
+  title={K-means++ the advantages of careful seeding},
+  author={Arthur, D. and Vassilvitskii, S.},
+  booktitle={Proceedings of the eighteenth annual ACM-SIAM symposium on Discrete algorithms},
+  pages={1027--1035},
+  year={2007}
+}
+
+@article{sola2018micro,
+  title={A micro Lie theory for state estimation in robotics},
+  author={Sola, Joan and Deray, Jeremie and Atchuthan, Dinesh},
+  journal={arXiv preprint arXiv:1812.01537},
+  year={2018}
+}
+
+@article{tuddenham1954physical,
+  title={Physical growth of California boys and girls from birth to age 18, Calif. Publ},
+  author={Tuddenham, R and Snyder, M},
+  journal={Child Deve},
+  volume={1},
+  pages={183364},
+  year={1954}
+}
+
+@book{ramsay2006functional,
+  title={Functional Data Analysis},
+  author={Ramsay, J.O. and Silverman, B.W.},
+  series={Springer series in statistics},
+  year={2006},
+  publisher={Springer Verlag}
+}
+
+@article{happ2020object,
+ title={Object-Oriented Software for Functional Data},
+ volume={93},
+ url={https://www.jstatsoft.org/index.php/jss/article/view/v093i05},
+ doi={10.18637/jss.v093.i05},
+ number={5},
+ journal={Journal of Statistical Software},
+ author={Happ-Kurz, Clara},
+ year={2020},
+ pages={1–38}
+}
+
+@book{silverman2002applied,
+title = "Applied Functional Data Analysis: Methods and Case Studies",
+author = "BW Silverman and JO Ramsay",
+note = "Other: Due for publication in June 2002",
+year = "2002",
+language = "English",
+publisher = "Springer, New York, NY",
+address = "United States",
+}