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@at-cg

ATCG

Algorithmic Techniques for Computational Genomics

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  1. PanAligner PanAligner Public

    Long read aligner for cyclic and acyclic pangenome graphs

    C 35 4

  2. minichain minichain Public

    Long-read aligner to pangenome graphs

    C 25 3

  3. RAFT RAFT Public

    C++ 20 1

  4. ChainX ChainX Public

    Anchor chaining method for nucleotide sequences

    C++ 8 2

  5. containX containX Public

    Contained read analysis for string graph construction during de novo genome assembly

    C++ 5 1

  6. PHI PHI Public

    Pangenome graph-based genome inference

    Python 5

Repositories

Showing 10 of 11 repositories
  • mm2-plus Public

    Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)

    at-cg/mm2-plus’s past year of commit activity
    C 0 0 0 0 Updated Nov 26, 2024
  • at-cg.github.io Public

    PI/Lab website

    at-cg/at-cg.github.io’s past year of commit activity
    SCSS 2 MIT 1 0 0 Updated Nov 19, 2024
  • PHI Public

    Pangenome graph-based genome inference

    at-cg/PHI’s past year of commit activity
    Python 5 0 1 0 Updated Oct 30, 2024
  • CGProb Public

    Counting coverage gaps

    at-cg/CGProb’s past year of commit activity
    C++ 3 1 0 0 Updated Oct 4, 2024
  • RAFT Public
    at-cg/RAFT’s past year of commit activity
    C++ 20 1 2 0 Updated Aug 22, 2024
  • minichain Public

    Long-read aligner to pangenome graphs

    at-cg/minichain’s past year of commit activity
    C 25 3 1 0 Updated May 20, 2024
  • PanAligner Public

    Long read aligner for cyclic and acyclic pangenome graphs

    at-cg/PanAligner’s past year of commit activity
    C 35 4 1 0 Updated Dec 20, 2023
  • containX Public

    Contained read analysis for string graph construction during de novo genome assembly

    at-cg/containX’s past year of commit activity
    C++ 5 1 0 0 Updated Apr 5, 2023
  • MMC Public

    Minimizer counting and analysis

    at-cg/MMC’s past year of commit activity
    C++ 2 1 0 0 Updated Oct 7, 2022
  • ChainX Public

    Anchor chaining method for nucleotide sequences

    at-cg/ChainX’s past year of commit activity
    C++ 8 Apache-2.0 2 1 0 Updated Mar 22, 2022
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