This is a library written to implement the neural activity model described in Robinson 2002, Freyer 2011, and Hindriks 2023. The model is intended to simulate the cortico-thalamic loop and alpha-band oscillations that this loop supports, as well as additional resonances within and between the cortex and thalamus.
Key references are:
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Robinson 2002 (https://journals.aps.org/pre/abstract/10.1103/PhysRevE.65.041924) - Describes a model of four interacting regions, finds steady-state operating points, and analyzes perturbations around those points to find oscillation modes.
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Freyer 2011 (https://www.jneurosci.org/content/31/17/6353.short) - Describes an extension to the model where noise is modulated by the network's output, providing a closer match to the distribution of oscillation modes found in biological recordings.
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Hindriks 2023 (https://www.nature.com/articles/s42003-023-04648-x) - Describes an extension to the model that couples together several instances of the Robinson/Freyer model to simulate co-oscillation of differenet brain regions.
examples-- Sample code that uses this library.library-- Matlab library function code.manual-- Project documentation PDFs.manual-src-- LaTeX files for rebuilding project documentation.reference-code-- Original code implemented by Hindriks and Tewarie for the 2023 paper. Duplicated with permission.
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