Adding to PyPI

Closes #5
Can update to v1.0 when ready

README.md

@@ -1,13 +1,17 @@
 # PopPUNK (POPulation Partitioning Using Nucleotide Kmers)
 
+[![Build Status](https://travis-ci.org/johnlees/PopPUNK.svg?branch=master)](https://travis-ci.org/johnlees/PopPUNK/)
+[![Documentation Status](https://poppunk.readthedocs.io/en/latest/?badge=latest)]((https://poppunk.readthedocs.io/)
+[![PyPI version](https://badge.fury.io/py/poppunk.svg)](https://badge.fury.io/py/poppunk)
+
 Step 1) Use k-mers to calculate core and accessory distances
 
 Step 2) Use core and accessory distance distribution to define strains
 
 Step 3) Pick references from strains, which can be used to assign new
 query sequences
 
-See the [documentation](http://poppunk.readthedocs.io/en/master/).
+See the [documentation](http://poppunk.readthedocs.io/en/latest/).
 
 ## Installation
 The easiest way is through pip, which we would also recommend being
@@ -88,7 +92,7 @@ poppunk --assign-query \
 
 If running without having installed through PyPI, run `python poppunk-runner.py` instead of `poppunk`.
 
-See the [documentation](http://poppunk.readthedocs.io/en/master/) for
+See the [documentation](http://poppunk.readthedocs.io/en/latest/) for
 full details.
 
 

setup.py

@@ -49,7 +49,7 @@ def find_version(*file_paths):
     packages=['PopPUNK'],
     entry_points={
         "console_scripts": [
-            'poppunk = PopPUNK.__main__:main'
+            'poppunk = PopPUNK.__main__:main',
             'prune_poppunk = PopPUNK.prune_db:main'
             ]
     },