Setup PyPI publish action #35
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Test package & measure coverage | |
| on: | |
| push: | |
| branches: [main, develop] | |
| pull_request: | |
| branches: [main, develop] | |
| jobs: | |
| tests: | |
| #####----- RUN FULL TEST SUITE WITHOUT COVERAGE | |
| # Test through actual installations for end-to-end testing including | |
| # packaging. | |
| strategy: | |
| matrix: | |
| os: [ubuntu-20.04, ubuntu-22.04, ubuntu-24.04, macos-12, macos-13, macos-14] | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| CLONE_PATH: ${{ github.workspace }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install OpenMPI | |
| run: | | |
| if [ "${{ runner.os }}" == "Linux" ]; then | |
| sudo apt-get update | |
| sudo apt-get -y install openmpi-bin | |
| elif [ "${{ runner.os }}" == "macOS" ]; then | |
| /bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/HEAD/install.sh)" | |
| brew install open-mpi | |
| fi | |
| - name: Setup base Python environment | |
| run: | | |
| $CLONE_PATH/.github/workflows/setup_base_python.sh ${{ runner.os }} | |
| python -m pip install build | |
| - name: Run tests without coverage | |
| run: | | |
| which mpirun | |
| which mpicxx | |
| mpicxx -show | |
| echo " " | |
| pushd $CLONE_PATH | |
| # Since the package is pure Python, the binary wheel should be | |
| # universal. Therefore, all pip installs from PyPI should get the | |
| # wheel rather than the source distribution and we test the wheel. | |
| python -m build --wheel | |
| python -m pip install dist/Taweret-*-py3-none-any.whl | |
| python -c "import Taweret ; Taweret.__version__ ; Taweret.test()" | |
| pushd $(dirname $(which python))/../lib/python*/site-packages/openbtmixing/.libs | |
| echo " " | |
| if [ "${{ matrix.os }}" == "ubuntu-20.04" ]; then | |
| ldd openbtcli | |
| # For 20.04/OpenMPI 4.0.3, | |
| # mpicxx uses -L/usr/lib/x86_64-linux-gnu/openmpi/lib. | |
| # However ldd uses /lib/x86_64-linux-gnu/libmpi.so.40. | |
| # Ultimately, it looks like we use | |
| # /lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3 | |
| # Note that there is a | |
| # /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3 | |
| # that has the same size (1124440) as the system version. | |
| # | |
| # My best guess is that the OpenMPI install is going to both | |
| # /lib and /usr/lib. Indeed, if you don't install OpenMPI Taweret | |
| # fails, which suggests no system MPI. | |
| # | |
| # These lines can be used to confirm that OpenMPI is being used | |
| # correctly at build and execution time. | |
| #echo " " | |
| #ls -la /usr/lib/x86_64-linux-gnu/openmpi/lib | |
| #echo " " | |
| #ls -la /lib/x86_64-linux-gnu/libmpi* | |
| #echo " " | |
| #ls -la /lib/x86_64-linux-gnu/openmpi/lib | |
| #echo " " | |
| elif [ "${{ matrix.os }}" == "ubuntu-22.04" ]; then | |
| ldd openbtcli | |
| # For 22.04/OpenMPI 4.1.2, | |
| # mpicxx uses -L/usr/lib/x86_64-linux-gnu/openmpi/lib. | |
| # However ldd uses /lib/x86_64-linux-gnu/libmpi.so.40. | |
| # Ultimately, it looks like we use | |
| # /lib/x86_64-linux-gnu/libmpi.so.40.30.2 | |
| # and I don't find any general MPI libraries in the locations | |
| # specified by mpicxx. | |
| # | |
| # My best guess is that the OpenMPI install is going to just | |
| # /lib and that there are being found by the compiler | |
| # automatically. Indeed, if you don't install OpenMPI Taweret | |
| # fails, which suggests no system MPI. This would imply that | |
| # mpicxx is assuming that the system install will be found but it | |
| # needs to identify where the (mostly) mca libs are. | |
| # | |
| # These lines can be used to confirm that OpenMPI is being used | |
| # correctly at build and execution time. | |
| #echo " " | |
| #ls -la /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3 | |
| #echo " " | |
| #ls -la /lib/x86_64-linux-gnu/libmpi* | |
| #echo " " | |
| #ls -la /lib/x86_64-linux-gnu/openmpi/lib/openmpi3 | |
| #echo " " | |
| elif [ "${{ runner.os }}" == "macOS" ]; then | |
| otool -L openbtcli | |
| fi | |
| echo " " | |
| objdump -p openbtcli | |
| echo " " | |
| popd | |
| popd | |
| coverage: | |
| #####----- RUN FULL TEST SUITE WITH COVERAGE | |
| # Use local editable/developer mode installation so that we are testing such | |
| # installations. For some code coverage services, this can also improve | |
| # the information that they present through their web interface. | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.12"] | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| CLONE_PATH: ${{ github.workspace }} | |
| # These two are used internally by tox | |
| COVERAGE_XML: ${{ github.workspace }}/coverage.xml | |
| COVERAGE_HTML: ${{ github.workspace }}/htmlcov | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install OpenMPI | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get -y install openmpi-bin | |
| - name: Setup base Python environment | |
| run: | | |
| $CLONE_PATH/.github/workflows/setup_base_python.sh ${{ matrix.os }} | |
| - name: Run tests with coverage | |
| run: | | |
| pushd $CLONE_PATH | |
| tox -r -e coverage,report | |
| popd | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.KEVIN_CODECOV_TOKEN }} | |
| slug: bandframework/Taweret | |
| file: ${{ env.COVERAGE_XML }} | |
| fail_ci_if_error: true | |
| - name: Archive code coverage results | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: code-coverage-results | |
| path: | | |
| ${{ env.COVERAGE_XML }} | |
| ${{ env.COVERAGE_HTML }} |