Created quick ParsCit lookup controller.

INSTALL.mkdn

@@ -0,0 +1,38 @@
+Installation
+============
+The installation is tested on a Macbook Pro running Mac OSX 10.6 Snowleopard. It
+will probably run on any *ix OS.
+
+Requirements
+------------
+
+ * [soap4r](http://dev.ctor.org/soap4r)
+
+Mac OSX 10.6 Installation
+-------------------------
+Bibmix application installation from remote git repository:
+
+	$ git clone [email protected]:bwenneker/bibmix_app.git
+	$ cd bibmix_app
+
+Then go to the bibmix plugin folder and retrieve the Bibmix submodules:
+
+	$ cd vendor/plugins/bibmix
+	$ git submodule init
+	$ git submodule update
+
+
+
+Requirements installation
+-------------------------
+
+	$ sudo gem install soap4r
+
+
+
+rake db:create:all
+rake db:test:prepare
+
+* * *
+Copyright (c) 2010 Bas Wenneker
+released under the MIT License

MIT-LICENSE

@@ -0,0 +1,20 @@
+Copyright (c) 2010 Bas Wenneker
+
+Permission is hereby granted, free of charge, to any person obtaining
+a copy of this software and associated documentation files (the
+"Software"), to deal in the Software without restriction, including
+without limitation the rights to use, copy, modify, merge, publish,
+distribute, sublicense, and/or sell copies of the Software, and to
+permit persons to whom the Software is furnished to do so, subject to
+the following conditions:
+
+The above copyright notice and this permission notice shall be
+included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
+LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
+OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
+WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

app/controllers/application_controller.rb

@@ -3,7 +3,7 @@
 
 class ApplicationController < ActionController::Base
   helper :all # include all helpers, all the time
-  protect_from_forgery # See ActionController::RequestForgeryProtection for details
+  protect_from_forgery :only => [:update, :delete, :create]# See ActionController::RequestForgeryProtection for details
 
   # Scrub sensitive parameters from your log
   # filter_parameter_logging :password

app/controllers/parscit_controller.rb

@@ -0,0 +1,68 @@
+require 'tempfile'
+require 'bibmix'
+
+class ParscitController < ApplicationController
+
+  def show
+  	citation = params[:citation]
+
+  	@parscit_record_yaml = 'Please make a request.'
+  	@enhanced_record_yaml = ''
+		if citation
+
+			# First parse the citation with parscit.
+			hash = parseWithParsCit(citation)
+			@parscit_record_yaml = hash.to_yaml
+			# Convert it to a Bibmix::Record so that it can be merged with data
+			# from bibsonomy.
+			record = Bibmix::Record.from_hash(hash)
+
+			# Execute the mixing process.
+	  	@enhanced_record = Bibmix::Bibsonomy::MixingProcess.new(record).execute
+
+			@enhanced_record_yaml = @enhanced_record.to_yaml
+		end
+
+		respond_to do |format|
+      format.html
+    end
+ end
+
+private
+	def parseWithParsCit(str)
+		if str.nil? || str.eql?("")
+      raise 'Citation string is nil or empty'
+    end
+
+    parscit_dir = "/home/bas/Documents/parscit-100401"
+    parscit_cmd = "#{parscit_dir}/bin/parseRefStrings.pl"
+
+    # Convert the passed string to UTF-8, this prevents possible
+    # seg faults in parseRefStrings.pl.
+    ic = Iconv.new('UTF-8//IGNORE', 'UTF-8')
+    valid_string = ic.iconv(str << ' ')[0..-2]
+
+    # The ParsCit executable only reads from file so create a
+    # temporary file an fill it with the citation string.
+    tmp = Tempfile.new("parscit_parser_tmp")
+    tmp.binmode
+    tmp.puts(valid_string)
+    tmp.close()
+
+    xml = `perl "#{parscit_cmd}" "#{tmp.path()}"`    
+    hsh = Hash.from_xml(xml)
+
+    citation = hsh['algorithm']['citationList']['citation']
+
+    tmp.unlink
+
+    if citation.is_a?(Hash)
+      citation
+    elsif citation.is_a?(Array) && citation.length
+      citation[0]
+    else
+      raise "Invalid citation datatype or no citations found (ln=#{citation.length})"
+    end 
+	end
+
+end

app/helpers/parscit_helper.rb

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+module ParscitHelper
+end

app/views/parscit/show.html.erb

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+<ul>
+	<li>Isaac G. Councill, C. Lee Giles, Min-Yen Kan. (2008) ParsCit: An open-source CRF reference string parsing package.  To appear in the proceedings of the Language Resources and Evaluation Conference (LREC 08), Marrakesh, Morrocco, May.</li>
+</ul>
+
+<form action="" method="post">
+	<textarea id="citation" name="citation" style="width:600px;"><% #if(!@citation){ 
+			#puts "Isaac G. Councill, C. Lee Giles, Min-Yen Kan. (2008) ParsCit: An open-source CRF reference string parsing package.  To appear in the proceedings of the Language Resources and Evaluation Conference (LREC 08), Marrakesh, Morrocco, May."
+		#}else{
+			#puts @citation
+		#} 
+%></textarea><br />
+	<button>Go!</button>	
+</form>
+
+<br />
+
+<div>
+	ParsCit:
+	<pre><%=@parscit_record_yaml%></pre>
+	Enhanced:
+	<pre><%=@enhanced_record_yaml%></pre>
+</div>

db/schema.rb

@@ -0,0 +1,14 @@
+# This file is auto-generated from the current state of the database. Instead of editing this file, 
+# please use the migrations feature of Active Record to incrementally modify your database, and
+# then regenerate this schema definition.
+#
+# Note that this schema.rb definition is the authoritative source for your database schema. If you need
+# to create the application database on another system, you should be using db:schema:load, not running
+# all the migrations from scratch. The latter is a flawed and unsustainable approach (the more migrations
+# you'll amass, the slower it'll run and the greater likelihood for issues).
+#
+# It's strongly recommended to check this file into your version control system.
+
+ActiveRecord::Schema.define(:version => 0) do
+
+end

test/functional/parscit_controller_test.rb

@@ -0,0 +1,8 @@
+require 'test_helper'
+
+class ParscitControllerTest < ActionController::TestCase
+  # Replace this with your real tests.
+  test "the truth" do
+    assert true
+  end
+end

test/unit/helpers/parscit_helper_test.rb

@@ -0,0 +1,4 @@
+require 'test_helper'
+
+class ParscitHelperTest < ActionView::TestCase
+end