.gitignore

# History files
.Rhistory
.Rapp.history

# Session Data files
.RData

# Example code in package build process
*-Ex.R

# Output files from R CMD build
/*.tar.gz

# Output files from R CMD check
/*.Rcheck/

# RStudio files
.Rproj.user/

# produced vignettes
vignettes/*.html
vignettes/*.pdf

# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth

# knitr and R markdown default cache directories
/*_cache/
/cache/

# Temporary files created by R markdown
*.utf8.md
*.knit.md

# .DS_Store
.DS_Store

# IPython Notebook
.ipynb_checkpoints

# Ignore intermediate clustering files
data/otus_97_bysample/KI*
data/fasta/*
data/merge/*
data/rawdata/*
data/otus_97_bysample/97_otus_bysample.biom
data/otus_97_bysample/all_97_otus.txt
data/otus_97_bysample/all_rep_set.fasta
data/otus_97_bysample/all_rep_set_clusters.uc
data/otus_97_bysample/all_rep_set_otus.log
data/otus_97_bysample/all_rep_set_otus.txt
data/otus_97_bysample/merged_otu_map.txt
data/otus_97_bysample/nosingles_otus.txt
data/Bioinf/clust/KI*

# Ignore raw data files
data/Bioinf/sequences/KI*
data/Bioinf/sequences/*

# Ignore merged fasta files
data/Bioinf/sequences/merged/KI*

# Ignore config files
*config

*.swp

#Ignore .log files
*.log
.Rproj.user