Skip to content
@bcbio

Blue Collar Bioinformatics

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

Pinned Loading

  1. bcbioR bcbioR Public

    R package with well defined templates for most common pipelines

    R 6 3

  2. rnaseq-reports rnaseq-reports Public

    code templates and training materials to perform downs-tream analysis from nf-core RNAseq pipelines

    R 1 2

  3. bcbioR-test-data bcbioR-test-data Public

    repository to host small dataset for bcbioR package

    R

  4. singlecell-reports singlecell-reports Public

    code templates and training materials to perform downstream analysis from scRNA preprocessing

    R

Repositories

Showing 10 of 25 repositories
  • bcbioR Public

    R package with well defined templates for most common pipelines

    bcbio/bcbioR’s past year of commit activity
    R 6 3 26 0 Updated Mar 17, 2025
  • singlecell-reports Public

    code templates and training materials to perform downstream analysis from scRNA preprocessing

    bcbio/singlecell-reports’s past year of commit activity
    R 0 0 0 0 Updated Mar 14, 2025
  • rnaseq-reports Public

    code templates and training materials to perform downs-tream analysis from nf-core RNAseq pipelines

    bcbio/rnaseq-reports’s past year of commit activity
    R 1 2 0 0 Updated Mar 14, 2025
  • bcbioR-test-data Public

    repository to host small dataset for bcbioR package

    bcbio/bcbioR-test-data’s past year of commit activity
    R 0 MIT 0 0 0 Updated Feb 17, 2025
  • nextflow-subsample Public

    subsampling fastq files for downstream samples

    bcbio/nextflow-subsample’s past year of commit activity
    Nextflow 0 MIT 0 1 0 Updated Dec 20, 2024
  • resources Public

    files used regularly in downstream analysis of NGS data

    bcbio/resources’s past year of commit activity
    0 MIT 1 0 0 Updated Oct 2, 2024
  • smrnaseq Public Forked from nf-core/smrnaseq

    A small-RNA sequencing analysis pipeline

    bcbio/smrnaseq’s past year of commit activity
    Nextflow 0 MIT 126 0 1 Updated Sep 4, 2024
  • bcbio-nextgen Public

    Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

    bcbio/bcbio-nextgen’s past year of commit activity
    Python 998 MIT 354 129 3 Updated Aug 24, 2024
  • bcbio.github.io Public

    Blue Collar Bioinformatics website

    bcbio/bcbio.github.io’s past year of commit activity
    HTML 9 3 0 0 Updated Apr 30, 2024
  • hivdrm Public

    Detect HIV Drug Resitant Mutations using amplicon sequencing data

    bcbio/hivdrm’s past year of commit activity
    Python 1 MIT 1 0 0 Updated May 20, 2023
View all repositories

Most used topics

Loading…