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Domain to mesh #151

Merged
merged 6 commits into from
Dec 3, 2024
Merged

Domain to mesh #151

merged 6 commits into from
Dec 3, 2024

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bmxam
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@bmxam bmxam commented Nov 21, 2024

A bit ugly, but seems to work!

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Benchmark result

Judge result

Benchmark Report for /home/runner/work/Bcube.jl/Bcube.jl

Job Properties

  • Time of benchmarks:
    • Target: 21 Nov 2024 - 11:56
    • Baseline: 21 Nov 2024 - 12:00
  • Package commits:
    • Target: 35f5e2
    • Baseline: 80ace7
  • Julia commits:
    • Target: 67dffc
    • Baseline: 67dffc
  • Julia command flags:
    • Target: None
    • Baseline: None
  • Environment variables:
    • Target: None
    • Baseline: None

Results

A ratio greater than 1.0 denotes a possible regression (marked with ❌), while a ratio less
than 1.0 denotes a possible improvement (marked with ✅). Only significant results - results
that indicate possible regressions or improvements - are shown below (thus, an empty table means that all
benchmark results remained invariant between builds).

ID time ratio memory ratio
["assemble", "poisson DG", "l_Ω(v)"] 0.79 (5%) ✅ 1.00 (1%)

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["assemble", "basic bilinear"]
  • ["assemble", "poisson DG"]
  • ["covo", "Quad"]
  • ["covo", "TriQuad"]
  • ["entities"]
  • ["mesh"]

Julia versioninfo

Target

Julia Version 1.10.6
Commit 67dffc4a8ae (2024-10-28 12:23 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.5 LTS
  uname: Linux 6.5.0-1025-azure #26~22.04.1-Ubuntu SMP Thu Jul 11 22:33:04 UTC 2024 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1  3242 MHz       1870 s          0 s        206 s       4432 s          0 s
       #2  3242 MHz       1762 s          0 s        199 s       4541 s          0 s
       #3  2445 MHz       2294 s          0 s        250 s       3961 s          0 s
       #4  3261 MHz       2123 s          0 s        249 s       4118 s          0 s
  Memory: 15.606491088867188 GB (12345.7578125 MB free)
  Uptime: 654.72 sec
  Load Avg:  1.02  1.25  0.79
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-15.0.7 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Baseline

Julia Version 1.10.6
Commit 67dffc4a8ae (2024-10-28 12:23 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.5 LTS
  uname: Linux 6.5.0-1025-azure #26~22.04.1-Ubuntu SMP Thu Jul 11 22:33:04 UTC 2024 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1  3191 MHz       2401 s          0 s        246 s       5881 s          0 s
       #2  2445 MHz       2262 s          0 s        231 s       6030 s          0 s
       #3  3270 MHz       2846 s          0 s        311 s       5371 s          0 s
       #4  3244 MHz       2472 s          0 s        292 s       5748 s          0 s
  Memory: 15.606491088867188 GB (12339.1328125 MB free)
  Uptime: 857.28 sec
  Load Avg:  1.08  1.15  0.85
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-15.0.7 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Target result

Benchmark Report for /home/runner/work/Bcube.jl/Bcube.jl

Job Properties

  • Time of benchmark: 21 Nov 2024 - 11:56
  • Package commit: 35f5e2
  • Julia commit: 67dffc
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["assemble", "basic bilinear", "mass matrix"] 15.222 ms (5%) 7.65 MiB (1%) 36
["assemble", "basic bilinear", "stiffness matrix"] 81.632 ms (5%) 7.65 MiB (1%) 35
["assemble", "poisson DG", "AffineFESystem"] 52.431 ms (5%) 71.56 MiB (1%) 17155
["assemble", "poisson DG", "a_Γ(u, v)"] 37.203 ms (5%) 59.32 MiB (1%) 13074
["assemble", "poisson DG", "a_Γb(u, v)"] 7.460 ms (5%) 10.79 MiB (1%) 3172
["assemble", "poisson DG", "a_Ω(u, v)"] 7.719 ms (5%) 231.53 KiB (1%) 25
["assemble", "poisson DG", "l_Γb(v)"] 58.058 μs (5%) 139.38 KiB (1%) 929
["assemble", "poisson DG", "l_Ω(v)"] 12.293 μs (5%) 2.12 KiB (1%) 1
["covo", "Quad", "explicit_step"] 79.329 ms (5%) 29.25 MiB (1%) 4398
["covo", "Quad", "integral_surface"] 49.715 ms (5%)
["covo", "Quad", "integral_volume"] 20.300 ms (5%)
["covo", "TriQuad", "explicit_step"] 381.600 ms (5%) 29.869 ms 341.57 MiB (1%) 1812324
["covo", "TriQuad", "integral_surface"] 281.377 ms (5%) 234.44 MiB (1%) 1424064
["covo", "TriQuad", "integral_volume"] 59.968 ms (5%) 51.71 MiB (1%) 379526
["entities", "edges2nodes"] 1.552 ns (5%)
["entities", "nedges"] 1.552 ns (5%)
["entities", "nnodes"] 3.095 ns (5%)
["entities", "nodes"] 1.552 ns (5%)
["mesh", "todo"] 1.552 ns (5%)

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["assemble", "basic bilinear"]
  • ["assemble", "poisson DG"]
  • ["covo", "Quad"]
  • ["covo", "TriQuad"]
  • ["entities"]
  • ["mesh"]

Julia versioninfo

Julia Version 1.10.6
Commit 67dffc4a8ae (2024-10-28 12:23 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.5 LTS
  uname: Linux 6.5.0-1025-azure #26~22.04.1-Ubuntu SMP Thu Jul 11 22:33:04 UTC 2024 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1  3242 MHz       1870 s          0 s        206 s       4432 s          0 s
       #2  3242 MHz       1762 s          0 s        199 s       4541 s          0 s
       #3  2445 MHz       2294 s          0 s        250 s       3961 s          0 s
       #4  3261 MHz       2123 s          0 s        249 s       4118 s          0 s
  Memory: 15.606491088867188 GB (12345.7578125 MB free)
  Uptime: 654.72 sec
  Load Avg:  1.02  1.25  0.79
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-15.0.7 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Baseline result

Benchmark Report for /home/runner/work/Bcube.jl/Bcube.jl

Job Properties

  • Time of benchmark: 21 Nov 2024 - 12:0
  • Package commit: 80ace7
  • Julia commit: 67dffc
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["assemble", "basic bilinear", "mass matrix"] 15.483 ms (5%) 7.65 MiB (1%) 36
["assemble", "basic bilinear", "stiffness matrix"] 82.925 ms (5%) 7.65 MiB (1%) 35
["assemble", "poisson DG", "AffineFESystem"] 53.188 ms (5%) 71.56 MiB (1%) 17155
["assemble", "poisson DG", "a_Γ(u, v)"] 37.480 ms (5%) 59.32 MiB (1%) 13074
["assemble", "poisson DG", "a_Γb(u, v)"] 7.771 ms (5%) 10.79 MiB (1%) 3172
["assemble", "poisson DG", "a_Ω(u, v)"] 7.744 ms (5%) 231.53 KiB (1%) 25
["assemble", "poisson DG", "l_Γb(v)"] 57.476 μs (5%) 139.38 KiB (1%) 929
["assemble", "poisson DG", "l_Ω(v)"] 15.589 μs (5%) 2.12 KiB (1%) 1
["covo", "Quad", "explicit_step"] 80.064 ms (5%) 29.25 MiB (1%) 4398
["covo", "Quad", "integral_surface"] 51.668 ms (5%)
["covo", "Quad", "integral_volume"] 20.337 ms (5%)
["covo", "TriQuad", "explicit_step"] 385.077 ms (5%) 30.212 ms 341.57 MiB (1%) 1812324
["covo", "TriQuad", "integral_surface"] 284.792 ms (5%) 234.44 MiB (1%) 1424064
["covo", "TriQuad", "integral_volume"] 60.280 ms (5%) 51.71 MiB (1%) 379526
["entities", "edges2nodes"] 1.552 ns (5%)
["entities", "nedges"] 1.552 ns (5%)
["entities", "nnodes"] 3.095 ns (5%)
["entities", "nodes"] 1.552 ns (5%)
["mesh", "todo"] 1.552 ns (5%)

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["assemble", "basic bilinear"]
  • ["assemble", "poisson DG"]
  • ["covo", "Quad"]
  • ["covo", "TriQuad"]
  • ["entities"]
  • ["mesh"]

Julia versioninfo

Julia Version 1.10.6
Commit 67dffc4a8ae (2024-10-28 12:23 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.5 LTS
  uname: Linux 6.5.0-1025-azure #26~22.04.1-Ubuntu SMP Thu Jul 11 22:33:04 UTC 2024 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1  3191 MHz       2401 s          0 s        246 s       5881 s          0 s
       #2  2445 MHz       2262 s          0 s        231 s       6030 s          0 s
       #3  3270 MHz       2846 s          0 s        311 s       5371 s          0 s
       #4  3244 MHz       2472 s          0 s        292 s       5748 s          0 s
  Memory: 15.606491088867188 GB (12339.1328125 MB free)
  Uptime: 857.28 sec
  Load Avg:  1.08  1.15  0.85
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-15.0.7 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Runtime information

Runtime Info
BLAS #threads 2
BLAS.vendor() lbt
Sys.CPU_THREADS 4

lscpu output:

Architecture:                       x86_64
CPU op-mode(s):                     32-bit, 64-bit
Address sizes:                      48 bits physical, 48 bits virtual
Byte Order:                         Little Endian
CPU(s):                             4
On-line CPU(s) list:                0-3
Vendor ID:                          AuthenticAMD
Model name:                         AMD EPYC 7763 64-Core Processor
CPU family:                         25
Model:                              1
Thread(s) per core:                 2
Core(s) per socket:                 2
Socket(s):                          1
Stepping:                           1
BogoMIPS:                           4890.87
Flags:                              fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm constant_tsc rep_good nopl tsc_reliable nonstop_tsc cpuid extd_apicid aperfmperf pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy svm cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext invpcid_single vmmcall fsgsbase bmi1 avx2 smep bmi2 erms invpcid rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 xsaves clzero xsaveerptr rdpru arat npt nrip_save tsc_scale vmcb_clean flushbyasid decodeassists pausefilter pfthreshold v_vmsave_vmload umip vaes vpclmulqdq rdpid fsrm
Virtualization:                     AMD-V
Hypervisor vendor:                  Microsoft
Virtualization type:                full
L1d cache:                          64 KiB (2 instances)
L1i cache:                          64 KiB (2 instances)
L2 cache:                           1 MiB (2 instances)
L3 cache:                           32 MiB (1 instance)
NUMA node(s):                       1
NUMA node0 CPU(s):                  0-3
Vulnerability Gather data sampling: Not affected
Vulnerability Itlb multihit:        Not affected
Vulnerability L1tf:                 Not affected
Vulnerability Mds:                  Not affected
Vulnerability Meltdown:             Not affected
Vulnerability Mmio stale data:      Not affected
Vulnerability Retbleed:             Not affected
Vulnerability Spec rstack overflow: Vulnerable: Safe RET, no microcode
Vulnerability Spec store bypass:    Vulnerable
Vulnerability Spectre v1:           Mitigation; usercopy/swapgs barriers and __user pointer sanitization
Vulnerability Spectre v2:           Mitigation; Retpolines; STIBP disabled; RSB filling; PBRSB-eIBRS Not affected; BHI Not affected
Vulnerability Srbds:                Not affected
Vulnerability Tsx async abort:      Not affected
Cpu Property Value
Brand AMD EPYC 7763 64-Core Processor
Vendor :AMD
Architecture :Unknown
Model Family: 0xaf, Model: 0x01, Stepping: 0x01, Type: 0x00
Cores 16 physical cores, 16 logical cores (on executing CPU)
No Hyperthreading hardware capability detected
Clock Frequencies Not supported by CPU
Data Cache Level 1:3 : (32, 512, 32768) kbytes
64 byte cache line size
Address Size 48 bits virtual, 48 bits physical
SIMD 256 bit = 32 byte max. SIMD vector size
Time Stamp Counter TSC is accessible via rdtsc
TSC runs at constant rate (invariant from clock frequency)
Perf. Monitoring Performance Monitoring Counters (PMC) are not supported
Hypervisor Yes, Microsoft

@github-actions GitHub Actions
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github-actions bot commented Nov 21, 2024 •
edited
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Benchmark Results

main 3bd0ea0... main/3bd0ea0adb711c...
assemble/basic bilinear/mass matrix 15.7 ± 0.14 ms 15.8 ± 0.15 ms 0.99
assemble/basic bilinear/stiffness matrix 0.0815 ± 0.0016 s 0.0823 ± 0.00032 s 0.991
assemble/poisson DG/AffineFESystem 0.0553 ± 0.0082 s 0.055 ± 0.0084 s 1.01
assemble/poisson DG/a_Γ(u, v) 0.0397 ± 0.0068 s 0.0394 ± 0.0067 s 1.01
assemble/poisson DG/a_Γb(u, v) 7.55 ± 0.27 ms 7.58 ± 0.21 ms 0.997
assemble/poisson DG/a_Ω(u, v) 7.66 ± 0.026 ms 7.65 ± 0.026 ms 1
assemble/poisson DG/l_Γb(v) 0.119 ± 0.024 ms 0.119 ± 0.015 ms 1
assemble/poisson DG/l_Ω(v) 13 ± 0.27 μs 12.7 ± 0.21 μs 1.02
covo/Quad/explicit_step 0.0818 ± 0.0008 s 0.082 ± 0.0013 s 0.998
covo/Quad/integral_surface 0.0519 ± 0.00031 s 0.0534 ± 0.00032 s 0.972
covo/Quad/integral_volume 20.6 ± 0.078 ms 22.4 ± 0.074 ms 0.918
covo/TriQuad/explicit_step 0.429 ± 0.034 s 0.422 ± 0.034 s 1.02
covo/TriQuad/integral_surface 0.342 ± 0.0048 s 0.32 ± 0.0048 s 1.07
covo/TriQuad/integral_volume 0.0815 ± 0.0029 s 0.0805 ± 0.0045 s 1.01
entities/edges2nodes 1.56 ± 0.01 ns 1.55 ± 0.01 ns 1.01
entities/nedges 1.55 ± 0.01 ns 1.56 ± 0.01 ns 0.995
entities/nnodes 3.71 ± 0.92 ns 4.97 ± 0.13 ns 0.746
entities/nodes 1.56 ± 0.01 ns 1.56 ± 0.01 ns 1
mesh/todo 1.55 ± 0.01 ns 1.56 ± 0.01 ns 0.994
time_to_load 2.91 ± 0.077 s 2.92 ± 0.07 s 0.995

Benchmark Plots

A plot of the benchmark results have been uploaded as an artifact to the workflow run for this PR.
Go to "Actions"->"Benchmark a pull request"->[the most recent run]->"Artifacts" (at the bottom).

@github-actions GitHub Actions
Copy link

Benchmark result

Judge result

Benchmark Report for /home/runner/work/Bcube.jl/Bcube.jl

Job Properties

  • Time of benchmarks:
    • Target: 21 Nov 2024 - 12:22
    • Baseline: 21 Nov 2024 - 12:25
  • Package commits:
    • Target: c91d4c
    • Baseline: 80ace7
  • Julia commits:
    • Target: 67dffc
    • Baseline: 67dffc
  • Julia command flags:
    • Target: None
    • Baseline: None
  • Environment variables:
    • Target: None
    • Baseline: None

Results

A ratio greater than 1.0 denotes a possible regression (marked with ❌), while a ratio less
than 1.0 denotes a possible improvement (marked with ✅). Only significant results - results
that indicate possible regressions or improvements - are shown below (thus, an empty table means that all
benchmark results remained invariant between builds).

ID time ratio memory ratio
["assemble", "basic bilinear", "stiffness matrix"] 0.87 (5%) ✅ 1.00 (1%)
["assemble", "poisson DG", "AffineFESystem"] 0.95 (5%) ✅ 1.00 (1%)
["assemble", "poisson DG", "l_Γb(v)"] 0.93 (5%) ✅ 1.00 (1%)
["entities", "nnodes"] 1.10 (5%) ❌ 1.00 (1%)

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["assemble", "basic bilinear"]
  • ["assemble", "poisson DG"]
  • ["covo", "Quad"]
  • ["covo", "TriQuad"]
  • ["entities"]
  • ["mesh"]

Julia versioninfo

Target

Julia Version 1.10.6
Commit 67dffc4a8ae (2024-10-28 12:23 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.5 LTS
  uname: Linux 6.5.0-1025-azure #26~22.04.1-Ubuntu SMP Thu Jul 11 22:33:04 UTC 2024 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1  2583 MHz       2013 s          0 s        250 s       4878 s          0 s
       #2  2445 MHz       2409 s          0 s        224 s       4516 s          0 s
       #3  2445 MHz       1723 s          0 s        216 s       5198 s          0 s
       #4  3244 MHz       1990 s          0 s        227 s       4911 s          0 s
  Memory: 15.606491088867188 GB (12440.484375 MB free)
  Uptime: 717.65 sec
  Load Avg:  1.09  1.26  0.8
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-15.0.7 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Baseline

Julia Version 1.10.6
Commit 67dffc4a8ae (2024-10-28 12:23 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.5 LTS
  uname: Linux 6.5.0-1025-azure #26~22.04.1-Ubuntu SMP Thu Jul 11 22:33:04 UTC 2024 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1  3211 MHz       2556 s          0 s        291 s       6348 s          0 s
       #2  2595 MHz       2823 s          0 s        260 s       6119 s          0 s
       #3  2445 MHz       1924 s          0 s        261 s       7004 s          0 s
       #4  3244 MHz       2792 s          0 s        287 s       6103 s          0 s
  Memory: 15.606491088867188 GB (12441.46484375 MB free)
  Uptime: 923.38 sec
  Load Avg:  1.08  1.16  0.86
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-15.0.7 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Target result

Benchmark Report for /home/runner/work/Bcube.jl/Bcube.jl

Job Properties

  • Time of benchmark: 21 Nov 2024 - 12:22
  • Package commit: c91d4c
  • Julia commit: 67dffc
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["assemble", "basic bilinear", "mass matrix"] 15.286 ms (5%) 7.65 MiB (1%) 36
["assemble", "basic bilinear", "stiffness matrix"] 80.590 ms (5%) 7.65 MiB (1%) 35
["assemble", "poisson DG", "AffineFESystem"] 51.990 ms (5%) 71.56 MiB (1%) 17155
["assemble", "poisson DG", "a_Γ(u, v)"] 37.447 ms (5%) 59.32 MiB (1%) 13074
["assemble", "poisson DG", "a_Γb(u, v)"] 7.163 ms (5%) 10.79 MiB (1%) 3172
["assemble", "poisson DG", "a_Ω(u, v)"] 7.831 ms (5%) 231.53 KiB (1%) 25
["assemble", "poisson DG", "l_Γb(v)"] 60.934 μs (5%) 139.38 KiB (1%) 929
["assemble", "poisson DG", "l_Ω(v)"] 12.312 μs (5%) 2.12 KiB (1%) 1
["covo", "Quad", "explicit_step"] 79.270 ms (5%) 29.25 MiB (1%) 4398
["covo", "Quad", "integral_surface"] 49.869 ms (5%)
["covo", "Quad", "integral_volume"] 20.268 ms (5%)
["covo", "TriQuad", "explicit_step"] 389.177 ms (5%) 28.664 ms 341.57 MiB (1%) 1812324
["covo", "TriQuad", "integral_surface"] 285.646 ms (5%) 234.44 MiB (1%) 1424064
["covo", "TriQuad", "integral_volume"] 61.731 ms (5%) 51.71 MiB (1%) 379526
["entities", "edges2nodes"] 1.552 ns (5%)
["entities", "nedges"] 1.552 ns (5%)
["entities", "nnodes"] 3.396 ns (5%)
["entities", "nodes"] 1.552 ns (5%)
["mesh", "todo"] 1.552 ns (5%)

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["assemble", "basic bilinear"]
  • ["assemble", "poisson DG"]
  • ["covo", "Quad"]
  • ["covo", "TriQuad"]
  • ["entities"]
  • ["mesh"]

Julia versioninfo

Julia Version 1.10.6
Commit 67dffc4a8ae (2024-10-28 12:23 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.5 LTS
  uname: Linux 6.5.0-1025-azure #26~22.04.1-Ubuntu SMP Thu Jul 11 22:33:04 UTC 2024 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1  2583 MHz       2013 s          0 s        250 s       4878 s          0 s
       #2  2445 MHz       2409 s          0 s        224 s       4516 s          0 s
       #3  2445 MHz       1723 s          0 s        216 s       5198 s          0 s
       #4  3244 MHz       1990 s          0 s        227 s       4911 s          0 s
  Memory: 15.606491088867188 GB (12440.484375 MB free)
  Uptime: 717.65 sec
  Load Avg:  1.09  1.26  0.8
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-15.0.7 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Baseline result

Benchmark Report for /home/runner/work/Bcube.jl/Bcube.jl

Job Properties

  • Time of benchmark: 21 Nov 2024 - 12:25
  • Package commit: 80ace7
  • Julia commit: 67dffc
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["assemble", "basic bilinear", "mass matrix"] 15.994 ms (5%) 7.65 MiB (1%) 36
["assemble", "basic bilinear", "stiffness matrix"] 92.249 ms (5%) 7.65 MiB (1%) 35
["assemble", "poisson DG", "AffineFESystem"] 54.751 ms (5%) 71.56 MiB (1%) 17155
["assemble", "poisson DG", "a_Γ(u, v)"] 37.980 ms (5%) 59.32 MiB (1%) 13074
["assemble", "poisson DG", "a_Γb(u, v)"] 7.411 ms (5%) 10.79 MiB (1%) 3172
["assemble", "poisson DG", "a_Ω(u, v)"] 7.659 ms (5%) 231.53 KiB (1%) 25
["assemble", "poisson DG", "l_Γb(v)"] 65.272 μs (5%) 139.38 KiB (1%) 929
["assemble", "poisson DG", "l_Ω(v)"] 12.323 μs (5%) 2.12 KiB (1%) 1
["covo", "Quad", "explicit_step"] 79.235 ms (5%) 29.25 MiB (1%) 4398
["covo", "Quad", "integral_surface"] 50.520 ms (5%)
["covo", "Quad", "integral_volume"] 20.311 ms (5%)
["covo", "TriQuad", "explicit_step"] 392.256 ms (5%) 30.784 ms 341.57 MiB (1%) 1812324
["covo", "TriQuad", "integral_surface"] 290.702 ms (5%) 234.44 MiB (1%) 1424064
["covo", "TriQuad", "integral_volume"] 61.768 ms (5%) 51.71 MiB (1%) 379526
["entities", "edges2nodes"] 1.552 ns (5%)
["entities", "nedges"] 1.552 ns (5%)
["entities", "nnodes"] 3.095 ns (5%)
["entities", "nodes"] 1.552 ns (5%)
["mesh", "todo"] 1.552 ns (5%)

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["assemble", "basic bilinear"]
  • ["assemble", "poisson DG"]
  • ["covo", "Quad"]
  • ["covo", "TriQuad"]
  • ["entities"]
  • ["mesh"]

Julia versioninfo

Julia Version 1.10.6
Commit 67dffc4a8ae (2024-10-28 12:23 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.5 LTS
  uname: Linux 6.5.0-1025-azure #26~22.04.1-Ubuntu SMP Thu Jul 11 22:33:04 UTC 2024 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1  3211 MHz       2556 s          0 s        291 s       6348 s          0 s
       #2  2595 MHz       2823 s          0 s        260 s       6119 s          0 s
       #3  2445 MHz       1924 s          0 s        261 s       7004 s          0 s
       #4  3244 MHz       2792 s          0 s        287 s       6103 s          0 s
  Memory: 15.606491088867188 GB (12441.46484375 MB free)
  Uptime: 923.38 sec
  Load Avg:  1.08  1.16  0.86
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-15.0.7 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Runtime information

Runtime Info
BLAS #threads 2
BLAS.vendor() lbt
Sys.CPU_THREADS 4

lscpu output:

Architecture:                       x86_64
CPU op-mode(s):                     32-bit, 64-bit
Address sizes:                      48 bits physical, 48 bits virtual
Byte Order:                         Little Endian
CPU(s):                             4
On-line CPU(s) list:                0-3
Vendor ID:                          AuthenticAMD
Model name:                         AMD EPYC 7763 64-Core Processor
CPU family:                         25
Model:                              1
Thread(s) per core:                 2
Core(s) per socket:                 2
Socket(s):                          1
Stepping:                           1
BogoMIPS:                           4890.85
Flags:                              fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm constant_tsc rep_good nopl tsc_reliable nonstop_tsc cpuid extd_apicid aperfmperf pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy svm cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext invpcid_single vmmcall fsgsbase bmi1 avx2 smep bmi2 erms invpcid rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 xsaves clzero xsaveerptr rdpru arat npt nrip_save tsc_scale vmcb_clean flushbyasid decodeassists pausefilter pfthreshold v_vmsave_vmload umip vaes vpclmulqdq rdpid fsrm
Virtualization:                     AMD-V
Hypervisor vendor:                  Microsoft
Virtualization type:                full
L1d cache:                          64 KiB (2 instances)
L1i cache:                          64 KiB (2 instances)
L2 cache:                           1 MiB (2 instances)
L3 cache:                           32 MiB (1 instance)
NUMA node(s):                       1
NUMA node0 CPU(s):                  0-3
Vulnerability Gather data sampling: Not affected
Vulnerability Itlb multihit:        Not affected
Vulnerability L1tf:                 Not affected
Vulnerability Mds:                  Not affected
Vulnerability Meltdown:             Not affected
Vulnerability Mmio stale data:      Not affected
Vulnerability Retbleed:             Not affected
Vulnerability Spec rstack overflow: Vulnerable: Safe RET, no microcode
Vulnerability Spec store bypass:    Vulnerable
Vulnerability Spectre v1:           Mitigation; usercopy/swapgs barriers and __user pointer sanitization
Vulnerability Spectre v2:           Mitigation; Retpolines; STIBP disabled; RSB filling; PBRSB-eIBRS Not affected; BHI Not affected
Vulnerability Srbds:                Not affected
Vulnerability Tsx async abort:      Not affected
Cpu Property Value
Brand AMD EPYC 7763 64-Core Processor
Vendor :AMD
Architecture :Unknown
Model Family: 0xaf, Model: 0x01, Stepping: 0x01, Type: 0x00
Cores 16 physical cores, 16 logical cores (on executing CPU)
No Hyperthreading hardware capability detected
Clock Frequencies Not supported by CPU
Data Cache Level 1:3 : (32, 512, 32768) kbytes
64 byte cache line size
Address Size 48 bits virtual, 48 bits physical
SIMD 256 bit = 32 byte max. SIMD vector size
Time Stamp Counter TSC is accessible via rdtsc
TSC runs at constant rate (invariant from clock frequency)
Perf. Monitoring Performance Monitoring Counters (PMC) are not supported
Hypervisor Yes, Microsoft

@bmxam bmxam requested a review from ghislainb November 21, 2024 14:11
ghislainb
ghislainb reviewed Nov 26, 2024
View reviewed changes
src/mesh/domain.jl Show resolved Hide resolved
src/mesh/domain.jl Outdated
@@ -16,6 +16,10 @@ abstract type AbstractCellDomain{M, I} <: AbstractDomain{M} end
A `CellDomain` is a representation of the cells of a mesh. It's primary
purpose is to represent a domain to integrate over.

# Constructors
CellDomain(mesh::Mesh)
CellDomain(mesh::Mesh, f::Function, all_nodes = true)
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I would suggest to create a specific function like identify_cell_indices(f, all_nodes = true) which returns the cell indices of cells whose vertices (or at least one vertex) verify f(x)==true as it could be relevant for other purpose.

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I've named it identify_cells, is it ok for you?

src/mesh/domain.jl Outdated Show resolved Hide resolved
src/mesh/domain.jl Outdated Show resolved Hide resolved
src/mesh/domain.jl Show resolved Hide resolved
test/mesh/test_domain.jl
@test ncells(new_mesh) == 3
@test Bcube.inner_faces(new_mesh) == [3, 6]
@test Bcube.outer_faces(new_mesh) == [1, 2, 4, 5, 7, 8, 9, 10]
@test Bcube.boundary_faces(new_mesh, "CLIPPED_BND") == [1, 4, 5]
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may be one test for original boundary face tags would be great to have

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please check the new version if it corresponds to what you asked for

@bmxam bmxam requested a review from ghislainb November 27, 2024 14:45
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Benchmark result

Judge result

Benchmark Report for /home/runner/work/Bcube.jl/Bcube.jl

Job Properties

  • Time of benchmarks:
    • Target: 27 Nov 2024 - 14:52
    • Baseline: 27 Nov 2024 - 14:56
  • Package commits:
    • Target: 6333c1
    • Baseline: 385365
  • Julia commits:
    • Target: 4976d0
    • Baseline: 4976d0
  • Julia command flags:
    • Target: None
    • Baseline: None
  • Environment variables:
    • Target: None
    • Baseline: None

Results

A ratio greater than 1.0 denotes a possible regression (marked with ❌), while a ratio less
than 1.0 denotes a possible improvement (marked with ✅). Only significant results - results
that indicate possible regressions or improvements - are shown below (thus, an empty table means that all
benchmark results remained invariant between builds).

ID time ratio memory ratio
["assemble", "poisson DG", "a_Γ(u, v)"] 0.95 (5%) ✅ 1.00 (1%)
["assemble", "poisson DG", "l_Γb(v)"] 0.84 (5%) ✅ 1.00 (1%)
["entities", "nnodes"] 1.10 (5%) ❌ 1.00 (1%)

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["assemble", "basic bilinear"]
  • ["assemble", "poisson DG"]
  • ["covo", "Quad"]
  • ["covo", "TriQuad"]
  • ["entities"]
  • ["mesh"]

Julia versioninfo

Target

Julia Version 1.10.7
Commit 4976d05258e (2024-11-26 15:57 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.5 LTS
  uname: Linux 6.5.0-1025-azure #26~22.04.1-Ubuntu SMP Thu Jul 11 22:33:04 UTC 2024 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1  3244 MHz       2190 s          0 s        222 s       3898 s          0 s
       #2  2445 MHz       2006 s          0 s        224 s       4077 s          0 s
       #3  2528 MHz       2218 s          0 s        234 s       3862 s          0 s
       #4  2614 MHz       2242 s          0 s        262 s       3801 s          0 s
  Memory: 15.606487274169922 GB (12278.62109375 MB free)
  Uptime: 634.61 sec
  Load Avg:  1.01  1.26  0.83
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-15.0.7 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Baseline

Julia Version 1.10.7
Commit 4976d05258e (2024-11-26 15:57 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.5 LTS
  uname: Linux 6.5.0-1025-azure #26~22.04.1-Ubuntu SMP Thu Jul 11 22:33:04 UTC 2024 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1  2445 MHz       2787 s          0 s        290 s       5333 s          0 s
       #2  2445 MHz       2548 s          0 s        260 s       5598 s          0 s
       #3  3238 MHz       2616 s          0 s        272 s       5526 s          0 s
       #4  3242 MHz       2716 s          0 s        310 s       5378 s          0 s
  Memory: 15.606487274169922 GB (12352.8515625 MB free)
  Uptime: 844.98 sec
  Load Avg:  1.0  1.13  0.87
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-15.0.7 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Target result

Benchmark Report for /home/runner/work/Bcube.jl/Bcube.jl

Job Properties

  • Time of benchmark: 27 Nov 2024 - 14:52
  • Package commit: 6333c1
  • Julia commit: 4976d0
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["assemble", "basic bilinear", "mass matrix"] 15.169 ms (5%) 7.65 MiB (1%) 36
["assemble", "basic bilinear", "stiffness matrix"] 80.230 ms (5%) 7.65 MiB (1%) 35
["assemble", "poisson DG", "AffineFESystem"] 52.202 ms (5%) 71.56 MiB (1%) 17155
["assemble", "poisson DG", "a_Γ(u, v)"] 36.858 ms (5%) 59.32 MiB (1%) 13074
["assemble", "poisson DG", "a_Γb(u, v)"] 7.259 ms (5%) 10.79 MiB (1%) 3172
["assemble", "poisson DG", "a_Ω(u, v)"] 7.751 ms (5%) 231.53 KiB (1%) 25
["assemble", "poisson DG", "l_Γb(v)"] 56.836 μs (5%) 139.38 KiB (1%) 929
["assemble", "poisson DG", "l_Ω(v)"] 12.333 μs (5%) 2.12 KiB (1%) 1
["covo", "Quad", "explicit_step"] 82.387 ms (5%) 29.25 MiB (1%) 4398
["covo", "Quad", "integral_surface"] 50.705 ms (5%)
["covo", "Quad", "integral_volume"] 20.374 ms (5%)
["covo", "TriQuad", "explicit_step"] 402.523 ms (5%) 29.724 ms 341.57 MiB (1%) 1812324
["covo", "TriQuad", "integral_surface"] 289.695 ms (5%) 234.44 MiB (1%) 1424064
["covo", "TriQuad", "integral_volume"] 61.170 ms (5%) 51.71 MiB (1%) 379526
["entities", "edges2nodes"] 1.552 ns (5%)
["entities", "nedges"] 1.552 ns (5%)
["entities", "nnodes"] 3.396 ns (5%)
["entities", "nodes"] 1.552 ns (5%)
["mesh", "todo"] 1.552 ns (5%)

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["assemble", "basic bilinear"]
  • ["assemble", "poisson DG"]
  • ["covo", "Quad"]
  • ["covo", "TriQuad"]
  • ["entities"]
  • ["mesh"]

Julia versioninfo

Julia Version 1.10.7
Commit 4976d05258e (2024-11-26 15:57 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.5 LTS
  uname: Linux 6.5.0-1025-azure #26~22.04.1-Ubuntu SMP Thu Jul 11 22:33:04 UTC 2024 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1  3244 MHz       2190 s          0 s        222 s       3898 s          0 s
       #2  2445 MHz       2006 s          0 s        224 s       4077 s          0 s
       #3  2528 MHz       2218 s          0 s        234 s       3862 s          0 s
       #4  2614 MHz       2242 s          0 s        262 s       3801 s          0 s
  Memory: 15.606487274169922 GB (12278.62109375 MB free)
  Uptime: 634.61 sec
  Load Avg:  1.01  1.26  0.83
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-15.0.7 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Baseline result

Benchmark Report for /home/runner/work/Bcube.jl/Bcube.jl

Job Properties

  • Time of benchmark: 27 Nov 2024 - 14:56
  • Package commit: 385365
  • Julia commit: 4976d0
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["assemble", "basic bilinear", "mass matrix"] 15.339 ms (5%) 7.65 MiB (1%) 36
["assemble", "basic bilinear", "stiffness matrix"] 79.647 ms (5%) 7.65 MiB (1%) 35
["assemble", "poisson DG", "AffineFESystem"] 54.137 ms (5%) 71.56 MiB (1%) 17155
["assemble", "poisson DG", "a_Γ(u, v)"] 38.943 ms (5%) 59.32 MiB (1%) 13074
["assemble", "poisson DG", "a_Γb(u, v)"] 7.376 ms (5%) 10.79 MiB (1%) 3172
["assemble", "poisson DG", "a_Ω(u, v)"] 7.735 ms (5%) 231.53 KiB (1%) 25
["assemble", "poisson DG", "l_Γb(v)"] 67.528 μs (5%) 139.38 KiB (1%) 929
["assemble", "poisson DG", "l_Ω(v)"] 12.423 μs (5%) 2.12 KiB (1%) 1
["covo", "Quad", "explicit_step"] 79.196 ms (5%) 29.25 MiB (1%) 4398
["covo", "Quad", "integral_surface"] 51.099 ms (5%)
["covo", "Quad", "integral_volume"] 20.025 ms (5%)
["covo", "TriQuad", "explicit_step"] 390.932 ms (5%) 30.254 ms 341.57 MiB (1%) 1812324
["covo", "TriQuad", "integral_surface"] 284.398 ms (5%) 234.44 MiB (1%) 1424064
["covo", "TriQuad", "integral_volume"] 60.648 ms (5%) 51.71 MiB (1%) 379526
["entities", "edges2nodes"] 1.552 ns (5%)
["entities", "nedges"] 1.552 ns (5%)
["entities", "nnodes"] 3.095 ns (5%)
["entities", "nodes"] 1.552 ns (5%)
["mesh", "todo"] 1.552 ns (5%)

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["assemble", "basic bilinear"]
  • ["assemble", "poisson DG"]
  • ["covo", "Quad"]
  • ["covo", "TriQuad"]
  • ["entities"]
  • ["mesh"]

Julia versioninfo

Julia Version 1.10.7
Commit 4976d05258e (2024-11-26 15:57 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.5 LTS
  uname: Linux 6.5.0-1025-azure #26~22.04.1-Ubuntu SMP Thu Jul 11 22:33:04 UTC 2024 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1  2445 MHz       2787 s          0 s        290 s       5333 s          0 s
       #2  2445 MHz       2548 s          0 s        260 s       5598 s          0 s
       #3  3238 MHz       2616 s          0 s        272 s       5526 s          0 s
       #4  3242 MHz       2716 s          0 s        310 s       5378 s          0 s
  Memory: 15.606487274169922 GB (12352.8515625 MB free)
  Uptime: 844.98 sec
  Load Avg:  1.0  1.13  0.87
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-15.0.7 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Runtime information

Runtime Info
BLAS #threads 2
BLAS.vendor() lbt
Sys.CPU_THREADS 4

lscpu output:

Architecture:                       x86_64
CPU op-mode(s):                     32-bit, 64-bit
Address sizes:                      48 bits physical, 48 bits virtual
Byte Order:                         Little Endian
CPU(s):                             4
On-line CPU(s) list:                0-3
Vendor ID:                          AuthenticAMD
Model name:                         AMD EPYC 7763 64-Core Processor
CPU family:                         25
Model:                              1
Thread(s) per core:                 2
Core(s) per socket:                 2
Socket(s):                          1
Stepping:                           1
BogoMIPS:                           4890.86
Flags:                              fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm constant_tsc rep_good nopl tsc_reliable nonstop_tsc cpuid extd_apicid aperfmperf pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy svm cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext invpcid_single vmmcall fsgsbase bmi1 avx2 smep bmi2 erms invpcid rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 xsaves clzero xsaveerptr rdpru arat npt nrip_save tsc_scale vmcb_clean flushbyasid decodeassists pausefilter pfthreshold v_vmsave_vmload umip vaes vpclmulqdq rdpid fsrm
Virtualization:                     AMD-V
Hypervisor vendor:                  Microsoft
Virtualization type:                full
L1d cache:                          64 KiB (2 instances)
L1i cache:                          64 KiB (2 instances)
L2 cache:                           1 MiB (2 instances)
L3 cache:                           32 MiB (1 instance)
NUMA node(s):                       1
NUMA node0 CPU(s):                  0-3
Vulnerability Gather data sampling: Not affected
Vulnerability Itlb multihit:        Not affected
Vulnerability L1tf:                 Not affected
Vulnerability Mds:                  Not affected
Vulnerability Meltdown:             Not affected
Vulnerability Mmio stale data:      Not affected
Vulnerability Retbleed:             Not affected
Vulnerability Spec rstack overflow: Vulnerable: Safe RET, no microcode
Vulnerability Spec store bypass:    Vulnerable
Vulnerability Spectre v1:           Mitigation; usercopy/swapgs barriers and __user pointer sanitization
Vulnerability Spectre v2:           Mitigation; Retpolines; STIBP disabled; RSB filling; PBRSB-eIBRS Not affected; BHI Not affected
Vulnerability Srbds:                Not affected
Vulnerability Tsx async abort:      Not affected
Cpu Property Value
Brand AMD EPYC 7763 64-Core Processor
Vendor :AMD
Architecture :Unknown
Model Family: 0xaf, Model: 0x01, Stepping: 0x01, Type: 0x00
Cores 16 physical cores, 16 logical cores (on executing CPU)
No Hyperthreading hardware capability detected
Clock Frequencies Not supported by CPU
Data Cache Level 1:3 : (32, 512, 32768) kbytes
64 byte cache line size
Address Size 48 bits virtual, 48 bits physical
SIMD 256 bit = 32 byte max. SIMD vector size
Time Stamp Counter TSC is accessible via rdtsc
TSC runs at constant rate (invariant from clock frequency)
Perf. Monitoring Performance Monitoring Counters (PMC) are not supported
Hypervisor Yes, Microsoft

ghislainb
ghislainb previously approved these changes Nov 29, 2024
View reviewed changes
@github-actions GitHub Actions
Copy link

github-actions bot commented Dec 2, 2024

Benchmark result

Judge result

Benchmark Report for /home/runner/work/Bcube.jl/Bcube.jl

Job Properties

  • Time of benchmarks:
    • Target: 2 Dec 2024 - 15:36
    • Baseline: 2 Dec 2024 - 15:39
  • Package commits:
    • Target: b7f625
    • Baseline: d2c84d
  • Julia commits:
    • Target: 4976d0
    • Baseline: 4976d0
  • Julia command flags:
    • Target: None
    • Baseline: None
  • Environment variables:
    • Target: None
    • Baseline: None

Results

A ratio greater than 1.0 denotes a possible regression (marked with ❌), while a ratio less
than 1.0 denotes a possible improvement (marked with ✅). Only significant results - results
that indicate possible regressions or improvements - are shown below (thus, an empty table means that all
benchmark results remained invariant between builds).

ID time ratio memory ratio
["assemble", "basic bilinear", "mass matrix"] 0.92 (5%) ✅ 1.00 (1%)
["assemble", "basic bilinear", "stiffness matrix"] 1.18 (5%) ❌ 1.00 (1%)
["assemble", "poisson DG", "a_Γb(u, v)"] 0.94 (5%) ✅ 1.00 (1%)
["covo", "TriQuad", "explicit_step"] 1.05 (5%) ❌ 1.00 (1%)

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["assemble", "basic bilinear"]
  • ["assemble", "poisson DG"]
  • ["covo", "Quad"]
  • ["covo", "TriQuad"]
  • ["entities"]
  • ["mesh"]

Julia versioninfo

Target

Julia Version 1.10.7
Commit 4976d05258e (2024-11-26 15:57 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.5 LTS
  uname: Linux 6.5.0-1025-azure #26~22.04.1-Ubuntu SMP Thu Jul 11 22:33:04 UTC 2024 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1  2445 MHz       2050 s          0 s        228 s       4470 s          0 s
       #2  2586 MHz       1802 s          0 s        191 s       4758 s          0 s
       #3  3242 MHz       2072 s          0 s        206 s       4448 s          0 s
       #4  3097 MHz       1964 s          0 s        180 s       4602 s          0 s
  Memory: 15.606491088867188 GB (12396.7734375 MB free)
  Uptime: 677.93 sec
  Load Avg:  1.01  1.19  0.75
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-15.0.7 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Baseline

Julia Version 1.10.7
Commit 4976d05258e (2024-11-26 15:57 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.5 LTS
  uname: Linux 6.5.0-1025-azure #26~22.04.1-Ubuntu SMP Thu Jul 11 22:33:04 UTC 2024 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1  3176 MHz       2814 s          0 s        291 s       5617 s          0 s
       #2  2599 MHz       2188 s          0 s        221 s       6314 s          0 s
       #3  2445 MHz       2584 s          0 s        258 s       5858 s          0 s
       #4  3241 MHz       2194 s          0 s        207 s       6318 s          0 s
  Memory: 15.606491088867188 GB (12331.53125 MB free)
  Uptime: 875.6 sec
  Load Avg:  1.0  1.09  0.81
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-15.0.7 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Target result

Benchmark Report for /home/runner/work/Bcube.jl/Bcube.jl

Job Properties

  • Time of benchmark: 2 Dec 2024 - 15:36
  • Package commit: b7f625
  • Julia commit: 4976d0
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["assemble", "basic bilinear", "mass matrix"] 15.205 ms (5%) 7.65 MiB (1%) 36
["assemble", "basic bilinear", "stiffness matrix"] 97.404 ms (5%) 7.65 MiB (1%) 35
["assemble", "poisson DG", "AffineFESystem"] 52.696 ms (5%) 71.56 MiB (1%) 17155
["assemble", "poisson DG", "a_Γ(u, v)"] 36.977 ms (5%) 59.32 MiB (1%) 13074
["assemble", "poisson DG", "a_Γb(u, v)"] 7.086 ms (5%) 10.79 MiB (1%) 3172
["assemble", "poisson DG", "a_Ω(u, v)"] 7.611 ms (5%) 231.53 KiB (1%) 25
["assemble", "poisson DG", "l_Γb(v)"] 58.900 μs (5%) 139.38 KiB (1%) 929
["assemble", "poisson DG", "l_Ω(v)"] 12.383 μs (5%) 2.12 KiB (1%) 1
["covo", "Quad", "explicit_step"] 79.247 ms (5%) 29.25 MiB (1%) 4398
["covo", "Quad", "integral_surface"] 50.356 ms (5%)
["covo", "Quad", "integral_volume"] 20.291 ms (5%)
["covo", "TriQuad", "explicit_step"] 402.395 ms (5%) 29.290 ms 341.57 MiB (1%) 1812324
["covo", "TriQuad", "integral_surface"] 285.188 ms (5%) 234.44 MiB (1%) 1424064
["covo", "TriQuad", "integral_volume"] 64.318 ms (5%) 51.71 MiB (1%) 379526
["entities", "edges2nodes"] 1.552 ns (5%)
["entities", "nedges"] 1.552 ns (5%)
["entities", "nnodes"] 3.095 ns (5%)
["entities", "nodes"] 1.552 ns (5%)
["mesh", "todo"] 1.552 ns (5%)

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["assemble", "basic bilinear"]
  • ["assemble", "poisson DG"]
  • ["covo", "Quad"]
  • ["covo", "TriQuad"]
  • ["entities"]
  • ["mesh"]

Julia versioninfo

Julia Version 1.10.7
Commit 4976d05258e (2024-11-26 15:57 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.5 LTS
  uname: Linux 6.5.0-1025-azure #26~22.04.1-Ubuntu SMP Thu Jul 11 22:33:04 UTC 2024 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1  2445 MHz       2050 s          0 s        228 s       4470 s          0 s
       #2  2586 MHz       1802 s          0 s        191 s       4758 s          0 s
       #3  3242 MHz       2072 s          0 s        206 s       4448 s          0 s
       #4  3097 MHz       1964 s          0 s        180 s       4602 s          0 s
  Memory: 15.606491088867188 GB (12396.7734375 MB free)
  Uptime: 677.93 sec
  Load Avg:  1.01  1.19  0.75
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-15.0.7 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Baseline result

Benchmark Report for /home/runner/work/Bcube.jl/Bcube.jl

Job Properties

  • Time of benchmark: 2 Dec 2024 - 15:39
  • Package commit: d2c84d
  • Julia commit: 4976d0
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["assemble", "basic bilinear", "mass matrix"] 16.512 ms (5%) 7.65 MiB (1%) 36
["assemble", "basic bilinear", "stiffness matrix"] 82.315 ms (5%) 7.65 MiB (1%) 35
["assemble", "poisson DG", "AffineFESystem"] 52.663 ms (5%) 71.56 MiB (1%) 17155
["assemble", "poisson DG", "a_Γ(u, v)"] 37.918 ms (5%) 59.32 MiB (1%) 13074
["assemble", "poisson DG", "a_Γb(u, v)"] 7.521 ms (5%) 10.79 MiB (1%) 3172
["assemble", "poisson DG", "a_Ω(u, v)"] 7.677 ms (5%) 231.53 KiB (1%) 25
["assemble", "poisson DG", "l_Γb(v)"] 58.690 μs (5%) 139.38 KiB (1%) 929
["assemble", "poisson DG", "l_Ω(v)"] 12.323 μs (5%) 2.12 KiB (1%) 1
["covo", "Quad", "explicit_step"] 79.402 ms (5%) 29.25 MiB (1%) 4398
["covo", "Quad", "integral_surface"] 51.617 ms (5%)
["covo", "Quad", "integral_volume"] 20.044 ms (5%)
["covo", "TriQuad", "explicit_step"] 381.760 ms (5%) 30.107 ms 341.57 MiB (1%) 1812324
["covo", "TriQuad", "integral_surface"] 275.866 ms (5%) 234.44 MiB (1%) 1424064
["covo", "TriQuad", "integral_volume"] 61.619 ms (5%) 51.71 MiB (1%) 379526
["entities", "edges2nodes"] 1.552 ns (5%)
["entities", "nedges"] 1.552 ns (5%)
["entities", "nnodes"] 3.095 ns (5%)
["entities", "nodes"] 1.552 ns (5%)
["mesh", "todo"] 1.552 ns (5%)

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["assemble", "basic bilinear"]
  • ["assemble", "poisson DG"]
  • ["covo", "Quad"]
  • ["covo", "TriQuad"]
  • ["entities"]
  • ["mesh"]

Julia versioninfo

Julia Version 1.10.7
Commit 4976d05258e (2024-11-26 15:57 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.5 LTS
  uname: Linux 6.5.0-1025-azure #26~22.04.1-Ubuntu SMP Thu Jul 11 22:33:04 UTC 2024 x86_64 x86_64
  CPU: AMD EPYC 7763 64-Core Processor: 
              speed         user         nice          sys         idle          irq
       #1  3176 MHz       2814 s          0 s        291 s       5617 s          0 s
       #2  2599 MHz       2188 s          0 s        221 s       6314 s          0 s
       #3  2445 MHz       2584 s          0 s        258 s       5858 s          0 s
       #4  3241 MHz       2194 s          0 s        207 s       6318 s          0 s
  Memory: 15.606491088867188 GB (12331.53125 MB free)
  Uptime: 875.6 sec
  Load Avg:  1.0  1.09  0.81
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-15.0.7 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Runtime information

Runtime Info
BLAS #threads 2
BLAS.vendor() lbt
Sys.CPU_THREADS 4

lscpu output:

Architecture:                       x86_64
CPU op-mode(s):                     32-bit, 64-bit
Address sizes:                      48 bits physical, 48 bits virtual
Byte Order:                         Little Endian
CPU(s):                             4
On-line CPU(s) list:                0-3
Vendor ID:                          AuthenticAMD
Model name:                         AMD EPYC 7763 64-Core Processor
CPU family:                         25
Model:                              1
Thread(s) per core:                 2
Core(s) per socket:                 2
Socket(s):                          1
Stepping:                           1
BogoMIPS:                           4890.85
Flags:                              fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm constant_tsc rep_good nopl tsc_reliable nonstop_tsc cpuid extd_apicid aperfmperf pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy svm cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext invpcid_single vmmcall fsgsbase bmi1 avx2 smep bmi2 erms invpcid rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 xsaves clzero xsaveerptr rdpru arat npt nrip_save tsc_scale vmcb_clean flushbyasid decodeassists pausefilter pfthreshold v_vmsave_vmload umip vaes vpclmulqdq rdpid fsrm
Virtualization:                     AMD-V
Hypervisor vendor:                  Microsoft
Virtualization type:                full
L1d cache:                          64 KiB (2 instances)
L1i cache:                          64 KiB (2 instances)
L2 cache:                           1 MiB (2 instances)
L3 cache:                           32 MiB (1 instance)
NUMA node(s):                       1
NUMA node0 CPU(s):                  0-3
Vulnerability Gather data sampling: Not affected
Vulnerability Itlb multihit:        Not affected
Vulnerability L1tf:                 Not affected
Vulnerability Mds:                  Not affected
Vulnerability Meltdown:             Not affected
Vulnerability Mmio stale data:      Not affected
Vulnerability Retbleed:             Not affected
Vulnerability Spec rstack overflow: Vulnerable: Safe RET, no microcode
Vulnerability Spec store bypass:    Vulnerable
Vulnerability Spectre v1:           Mitigation; usercopy/swapgs barriers and __user pointer sanitization
Vulnerability Spectre v2:           Mitigation; Retpolines; STIBP disabled; RSB filling; PBRSB-eIBRS Not affected; BHI Not affected
Vulnerability Srbds:                Not affected
Vulnerability Tsx async abort:      Not affected
Cpu Property Value
Brand AMD EPYC 7763 64-Core Processor
Vendor :AMD
Architecture :Unknown
Model Family: 0xaf, Model: 0x01, Stepping: 0x01, Type: 0x00
Cores 16 physical cores, 16 logical cores (on executing CPU)
No Hyperthreading hardware capability detected
Clock Frequencies Not supported by CPU
Data Cache Level 1:3 : (32, 512, 32768) kbytes
64 byte cache line size
Address Size 48 bits virtual, 48 bits physical
SIMD 256 bit = 32 byte max. SIMD vector size
Time Stamp Counter TSC is accessible via rdtsc
TSC runs at constant rate (invariant from clock frequency)
Perf. Monitoring Performance Monitoring Counters (PMC) are not supported
Hypervisor Yes, Microsoft

@bmxam bmxam merged commit 225bc86 into main Dec 3, 2024
10 checks passed
@bmxam bmxam deleted the domain-to-mesh branch December 3, 2024 08:12
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@ghislainb ghislainb ghislainb left review comments

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@bmxam @ghislainb