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Store package names in arrow metadata #122

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8 changes: 5 additions & 3 deletions Project.toml
Original file line number Diff line number Diff line change
Expand Up @@ -18,9 +18,10 @@ ArrowTypes = "2.3"
Compat = "3.34, 4"
ConstructionBase = "1.5.7"
DataFrames = "1"
Pkg = "<0.0.1, 1"
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Tables = "1.4"
Test = "1"
UUIDs = "1"
Test = "<0.0.1, 1"
UUIDs = "<0.0.1, 1"
julia = "1.6"

[extensions]
Expand All @@ -31,11 +32,12 @@ Accessors = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697"
Aqua = "4c88cf16-eb10-579e-8560-4a9242c79595"
Compat = "34da2185-b29b-5c13-b0c7-acf172513d20"
DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
UUIDs = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"

[targets]
test = ["Accessors", "Aqua", "Compat", "DataFrames", "Test", "UUIDs"]
test = ["Accessors", "Aqua", "Compat", "DataFrames", "Pkg", "Test", "UUIDs"]

[weakdeps]
ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9"
1 change: 1 addition & 0 deletions docs/src/index.md
Original file line number Diff line number Diff line change
Expand Up @@ -19,6 +19,7 @@ Legolas.parse_identifier
Legolas.name
Legolas.version
Legolas.identifier
Legolas.schema_provider
Legolas.parent
Legolas.declared_fields
Legolas.declaration
Expand Down
2 changes: 2 additions & 0 deletions src/Legolas.jl
Original file line number Diff line number Diff line change
Expand Up @@ -3,6 +3,8 @@ module Legolas
using Tables, Arrow, UUIDs

const LEGOLAS_SCHEMA_QUALIFIED_METADATA_KEY = "legolas_schema_qualified"
const LEGOLAS_SCHEMA_PROVIDER_NAME_METADATA_KEY = "legolas_julia_schema_provider_name"
const LEGOLAS_SCHEMA_PROVIDER_VERSION_METADATA_KEY = "legolas_julia_schema_provider_version"

include("lift.jl")
include("schemas.jl")
Expand Down
56 changes: 50 additions & 6 deletions src/schemas.jl
Original file line number Diff line number Diff line change
Expand Up @@ -98,8 +98,12 @@

struct UnknownSchemaVersionError <: Exception
schema_version::SchemaVersion
schema_provider_name::Union{Missing,Symbol}
schema_provider_version::Union{Missing,VersionNumber}
end

UnknownSchemaVersionError(schema_version::SchemaVersion) = UnknownSchemaVersionError(schema_version, missing, missing)

function Base.showerror(io::IO, e::UnknownSchemaVersionError)
print(io, """
UnknownSchemaVersionError: encountered unknown Legolas schema version:
Expand All @@ -110,13 +114,33 @@
This generally indicates that this schema has not been declared (i.e.
the corresponding `@schema` and/or `@version` statements have not been
executed) in the current Julia session.
""")
println(io)

if !ismissing(e.schema_provider_name)
provider_string = string(e.schema_provider_name)
if !ismissing(e.schema_provider_version)
provider_string *= string(" (version: ", e.schema_provider_version, ")")
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end
print(io, """
The table's metadata indicates that the table was created with a schema defined in:

In practice, this can arise if you try to read a Legolas table with a
prescribed schema, but haven't actually loaded the schema definition
(or commonly, haven't loaded the dependency that contains the schema
definition - check the versions of loaded packages/modules to confirm
your environment is as expected).
$(provider_string)
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You likely need to load a compatible version of this package to populate your session with the schema definition.
""")
else
print(io, """

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In practice, this can arise if you try to read a Legolas table with a
prescribed schema, but haven't actually loaded the schema definition
(or commonly, haven't loaded the dependency that contains the schema
definition - check the versions of loaded packages/modules to confirm
your environment is as expected).
""")
end
println(io)

print(io, """
Note that if you're in this particular situation, you can still load the raw
table as-is without Legolas (e.g. via `Arrow.Table(path_to_table)`).
""")
Expand Down Expand Up @@ -165,6 +189,25 @@
"""
identifier(sv::SchemaVersion) = throw(UnknownSchemaVersionError(sv))

"""
Legolas.schema_provider(::SchemaVersion)

Returns a NamedTuple with keys `name` and `version`. The name is a `Symbol` corresponding to the package which defines the schema version, if known; otherwise `nothing`. Likewise the `version` is a `VersionNumber` or `nothing`.
"""
schema_provider(::SchemaVersion) = (; name=nothing, version=nothing)

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# shadow `pkgversion` so we don't fail on pre-1.9
pkgversion(m::Module) = isdefined(Base, :pkgversion) ? Base.pkgversion(m) : nothing

# Used in the implementation of `schema_provider`.
function defining_package_version(m::Module)
rootmodule = Base.moduleroot(m)
# Check if this module was defined in a package.
# If not, return `nothing`
path = pathof(rootmodule)
path === nothing && return (; name=nothing, version=nothing)
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return (; name=Symbol(rootmodule), version=pkgversion(rootmodule))
end

"""
Legolas.declared_fields(sv::Legolas.SchemaVersion)

Expand Down Expand Up @@ -375,7 +418,7 @@
schema_prefix isa Symbol || return :(throw(ArgumentError(string("`Prefix` provided to `@schema` is not a valid type name: ", $(Base.Meta.quot(schema_prefix))))))
return quote
# This approach provides some safety against accidentally replacing another module's schema's name,
# without making it annoying to reload code/modules in an interactice development context.
# without making it annoying to reload code/modules in an interactive development context.
m = $Legolas._schema_declared_in_module(Val(Symbol($schema_name)))
if m isa Module && string(m) != string(@__MODULE__)
throw(ArgumentError(string("A schema with this name was already declared by a different module: ", m)))
Expand Down Expand Up @@ -476,6 +519,7 @@
return quote
@inline $Legolas.declared(::$quoted_schema_version_type) = true
@inline $Legolas.identifier(::$quoted_schema_version_type) = $identifier_string
$Legolas.schema_provider(::$quoted_schema_version_type) = $Legolas.defining_package_version(@__MODULE__)
@inline $Legolas.parent(::$quoted_schema_version_type) = $(Base.Meta.quot(parent))
$Legolas.declared_fields(::$quoted_schema_version_type) = $declared_field_names_types
$Legolas.declaration(::$quoted_schema_version_type) = $(Base.Meta.quot(schema_version_declaration))
Expand Down
33 changes: 31 additions & 2 deletions src/tables.jl
Original file line number Diff line number Diff line change
Expand Up @@ -132,10 +132,16 @@
Otherwise, return `nothing`.
"""
function extract_schema_version(table)
v = extract_metadata(table, LEGOLAS_SCHEMA_QUALIFIED_METADATA_KEY)
isnothing(v) && return nothing
return first(parse_identifier(v))
end

function extract_metadata(table, key)
metadata = Arrow.getmetadata(table)
if !isnothing(metadata)
for (k, v) in metadata
k == LEGOLAS_SCHEMA_QUALIFIED_METADATA_KEY && return first(parse_identifier(v))
k == key && return v
end
end
return nothing
Expand Down Expand Up @@ -165,6 +171,15 @@
via `Legolas.read`; is it missing the expected custom metadata and/or the
expected \"$LEGOLAS_SCHEMA_QUALIFIED_METADATA_KEY\" field?
"""))

provider_name = lift(Symbol, extract_metadata(table, LEGOLAS_SCHEMA_PROVIDER_NAME_METADATA_KEY))
provider_version = lift(VersionNumber, extract_metadata(table, LEGOLAS_SCHEMA_PROVIDER_VERSION_METADATA_KEY))
# If we don't have the schema declared in our session,
# then throw an error with all the information we have available about where
# the schema was defined.
if !declared(sv)
throw(UnknownSchemaVersionError(sv, provider_name, provider_version))
end
try
Legolas.validate(Tables.schema(table), sv)
catch
Expand Down Expand Up @@ -213,11 +228,26 @@
end
end
schema_metadata = LEGOLAS_SCHEMA_QUALIFIED_METADATA_KEY => identifier(sv)
provider_name, provider_version = schema_provider(sv)
provider_name_metadata = LEGOLAS_SCHEMA_PROVIDER_NAME_METADATA_KEY => string(provider_name)
provider_version_metadata = LEGOLAS_SCHEMA_PROVIDER_VERSION_METADATA_KEY => string(provider_version)
if isnothing(metadata)
metadata = (schema_metadata,)
if !isnothing(provider_name)
metadata = (metadata..., provider_name_metadata)
if !isnothing(provider_version)
metadata = (metadata..., provider_version_metadata)
end
end
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else
metadata = Set(metadata)
push!(metadata, schema_metadata)
if !isnothing(provider_name)
push!(metadata, provider_name_metadata)
if !isnothing(provider_version)
push!(metadata, provider_version_metadata)

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end
end
end
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write_arrow(io_or_path, table; metadata=metadata, kwargs...)
return table
Expand All @@ -237,4 +267,3 @@
seekstart(io)
return io
end

6 changes: 6 additions & 0 deletions test/TestProviderPkg/Project.toml
Original file line number Diff line number Diff line change
@@ -0,0 +1,6 @@
name = "TestProviderPkg"
uuid = "0abfdf01-ee0b-4279-9694-f097aec3ad32"
version = "0.1.0"

[deps]
Legolas = "741b9549-f6ed-4911-9fbf-4a1c0c97f0cd"
11 changes: 11 additions & 0 deletions test/TestProviderPkg/src/TestProviderPkg.jl
Original file line number Diff line number Diff line change
@@ -0,0 +1,11 @@
module TestProviderPkg

using Legolas: @schema, @version

@schema "test-provider-pkg.foo" Foo

@version FooV1 begin
a::Int
end

end # module TestProviderPkg
25 changes: 25 additions & 0 deletions test/runtests.jl
Original file line number Diff line number Diff line change
Expand Up @@ -3,6 +3,31 @@ using Legolas, Test, DataFrames, Arrow, UUIDs
using Legolas: SchemaVersion, @schema, @version, SchemaVersionDeclarationError, DeclaredFieldInfo
using Accessors
using Aqua
using Pkg

# This test set goes before we load `TestProviderPkg`
@testset "#46: Informative errors when reading unknown schemas from packages" begin
err = Legolas.UnknownSchemaVersionError(Legolas.SchemaVersion("test-provider-pkg.foo", 1), :TestProviderPkg, v"0.1.0")
@test_throws err Legolas.read("test_provider_pkg.arrow")
@test contains(sprint(Base.showerror, err), "TestProviderPkg")

# Let's test some more error printing while we're here; if we did not have the VersionNumber
# (e.g. since the table was generated on Julia pre-1.9), we should still print a reasonable message:
err = Legolas.UnknownSchemaVersionError(Legolas.SchemaVersion("test-provider-pkg.foo", 1), :TestProviderPkg, missing)
@test contains(sprint(Base.showerror, err), "TestProviderPkg")
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end

# Now load the package, and verify we can write the tables with this metadata
Pkg.develop(; path=joinpath(@__DIR__, "TestProviderPkg"))
using TestProviderPkg

@testset "#46: Writing informative metadata about packages providing schemas" begin
table = [TestProviderPkg.FooV1(; a=1)]
Legolas.write("test_provider_pkg.arrow", table, TestProviderPkg.FooV1SchemaVersion())
table = Legolas.read("test_provider_pkg.arrow")
v = Legolas.extract_metadata(table, Legolas.LEGOLAS_SCHEMA_PROVIDER_NAME_METADATA_KEY)
@test v == "TestProviderPkg"
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end

@test_throws SchemaVersionDeclarationError("no prior `@schema` declaration found in current module") @version(TestV1, begin x end)

Expand Down
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