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Fix integration tests TestRecoverFromInvalidOutputConfiguration (elas…
…tic#40195) TestRecoverFromInvalidOutputConfiguration was failing due to a closed channel being closed again. Since 0e9c9de was introduced the Filestream input is reporting its status, which leads Filebeat to make more CheckIn calls to the Elastic-Agent. The test could not handle the extra calls. A boolean atomic flag has been introduced to indicate the channel has already been closed.
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