optimized environment with packages moved from pip to conda

deployments/datahub/images/default/environment.yml

@@ -103,89 +103,89 @@ dependencies:
 # EPS 256, https://github.com/berkeley-dsep-infra/datahub/issues/1775
 - obspy==1.3.0
 
+# error converting to PDF https://github.com/berkeley-dsep-infra/datahub/issues/5062
+- nbconvert[webpdf]
+
+# eep 153; spring 2024
+- requests==2.31.0
+- Pint==0.17
+# Google spreadsheets, Eric Van Dusen / Keeley Takimoto / Modules
+- gspread-pandas==2.3.0
+- gspread==4.0.1
+
+# eps 109; fall 2024
+- ffmpeg-python==0.2.0
+
+# issue #875, global 150Q/pacs 190 - fall 2024
+- wordcloud==1.8.1
+
+# issue #929, SW 282 - fall 2024
+- pyreadstat==1.1.2
+
+# issue 954, EPS24 - fall 2019
+# balaji to confirm is this is still being taught
+- xarray==0.19.0
+
+# issue 1001, Physics 188/288 - fall 2024
+- umap-learn==0.5.1
+- hdbscan==0.8.31
+- getdist==1.3.1
+- tensorflow-hub==0.12.0
+- tensorflow-probability==0.13.0
+
+# espm 125/bio 105; fall 2022
+# see https://github.com/berkeley-dsep-infra/datahub/issues/1796
+# balaji to confirm if this is still being taught
+- bitarray==2.3.0
+
+# ds198 mch infodemiology, fall 2020/spring 2021
+# google apis
+# balaji to check
+- google-api-python-client==2.15.0
+- google-auth-httplib2==0.1.0
+- google-auth-oauthlib==0.4.5
+- google==3.0.0
+
+# issue 1847; LS 22 spring 2021
+# balaji to reach out and confirm it's being taught SP24
+- graphviz==0.17
+
+# issue #1903, data h195A fall 2020+
+# still required according to ericvd
+- habanero==0.7.4
+
+# https://github.com/berkeley-dsep-infra/datahub/issues/2950
+# Needed to work with a new enough version of httplib2
+- httplib2>=0.20.2
+
+# Used by MCB32, but incompatible with ipywidgets 8.x
+- qgrid==1.3.1
+
 - pip:
   - -r /tmp/infra-requirements.txt
   # Econ 148, Spring 2023 https://github.com/berkeley-dsep-infra/datahub/issues/4093
   - pycountry-convert==0.7.2
-  # error converting to PDF https://github.com/berkeley-dsep-infra/datahub/issues/5062
-  - nbconvert[webpdf]
   #
   # Former contents of requirements.txt
   # Some things were moved up to conda above.
   #
   # Until https://github.com/okpy/ok-client/pull/473 is merged
-  - git+https://github.com/yuvipanda/ok-client@6961d778741fe61911be4d00beff9bd8afc1edf7
+  # - git+https://github.com/yuvipanda/ok-client@6961d778741fe61911be4d00beff9bd8afc1edf7
+  - okpy
   #
   - jupyter-shiny-proxy==1.1
   #
   # nb2pdf==0.6.2 commented out by sknapp 06.10.2023 to unblock https://github.com/berkeley-dsep-infra/datahub/issues/5062
   #
 
-  # astr 128/256; spring 2021
-  - astroquery==0.4.6
-  - astropy==5.1
-  - dustmaps==1.0.9
-  - george==0.4.0
-  - exoplanet==0.5.2
-  - torch==1.13.1
-  - torchvision==0.14.1
-  - pyvo==1.1
-  - joblib==1.3.1
-  - theano-pymc==1.1.2
-  - pymc3==3.11.2
-
-  # eep 153; spring 2019
-  - requests==2.31.0
-  - Pint==0.17
-  # Google spreadsheets, Eric Van Dusen / Keeley Takimoto / Modules
-  - gspread-pandas==2.3.0
-  - gspread==4.0.1
-
-  # eps 109; fall 2019
-  - ffmpeg-python==0.2.0
-
-  # issue #875, global 150Q/pacs 190 - fall 2019
-  - wordcloud==1.8.1
-
-  # issue #929, SW 282 - fall 2019
-  - pyreadstat==1.1.2
-
-  # issue 954, EPS24 - fall 2019
-  - xarray==0.19.0
-
-  # issue 1001, Physics 188/288 - fall 2019
-  - umap-learn==0.5.1
-  - hdbscan==0.8.31
-
-  # espm 125/bio 105; fall 2019
+  # espm 125/bio 105; fall 2022
   # see https://github.com/berkeley-dsep-infra/datahub/issues/1796
-  - bitarray==2.3.0
+  # balaji to confirm if this is still being taught
   - nlmpy==1.0.1
 
-  # physics 188/288 fall, 2019
-  - getdist==1.3.1
-  - tensorflow-hub==0.12.0
-  - tensorflow-probability==0.13.0
-
   # cs16A/B, spring 2020
   - lcapy==0.96
 
-  # ds198 mch infodemiology, fall 2020/spring 2021
-  # google apis
-  - google-api-python-client==2.15.0
-  - google-auth-httplib2==0.1.0
-  - google-auth-oauthlib==0.4.5
-  - google==3.0.0
-
-  # issue 1847; LS 22 spring 2021
-  - graphviz==0.17
-
-  # issue #1903, data h195A fall 2020
-  - habanero==0.7.4
-
-  # https://github.com/berkeley-dsep-infra/datahub/issues/1981
-  - ipycanvas==0.9.0
-
   # prob140 2021 Spring
   # sknapp 2023-12-15:  we will eventually move prob140 back to datahub in FA24
   # https://jira-secure.berkeley.edu/browse/DH-203
@@ -194,10 +194,3 @@ dependencies:
 
   # IB 105 / ESPM 125, Fall 2021 - https://github.com/berkeley-dsep-infra/datahub/issues/2696
   - geonomics==1.3.0
-
-  # https://github.com/berkeley-dsep-infra/datahub/issues/2950
-  # Needed to work with a new enough version of httplib2
-  - httplib2>=0.20.2
-
-  # Used by MCB32, but incompatible with ipywidgets 8.x
-  - qgrid==1.3.1