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Custom image, BUT I'm having personal repo2docker issues in general
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# Some linux packages for basic terminal work, particularly | ||
# oriented at users new to Unix/cmd line environments. | ||
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# installing less as more just isn't enough | ||
less | ||
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# Basic unix tools | ||
man | ||
man-db | ||
manpages-posix | ||
manpages-dev | ||
manpages-posix-dev | ||
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# Download tools | ||
curl | ||
wget | ||
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# Core text editors on a *nix box: vim | ||
vim | ||
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# A couple of CLI editors that are easier than vim | ||
# micro # currently not working on 18.04 | ||
nano | ||
jed | ||
jed-extra | ||
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# powerful terminal-based file manager, better than the one in JLab | ||
mc | ||
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# for easily managing multiple repositories with one command (perl-doc | ||
# is needed for its help pages to work) | ||
mr | ||
perl-doc | ||
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# Regular build tools for compiling common stuff | ||
build-essential | ||
gfortran | ||
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# Dependencies for nbconvert | ||
texlive-xetex | ||
texlive-fonts-recommended | ||
texlive-plain-generic | ||
# https://github.com/berkeley-dsep-infra/datahub/issues/3719 | ||
texlive-lang-chinese | ||
lmodern | ||
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# Other useful document-related tools | ||
pandoc | ||
latexdiff | ||
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# Some useful git utilities use basic Ruby | ||
ruby | ||
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# Other niceties for command-line work and life | ||
ack # powerful grep-like tool | ||
pydf # colorized disk usage | ||
tmux | ||
screen | ||
htop | ||
nnn # cmd line file manager | ||
zsh | ||
rsync | ||
tig # console UI for git | ||
multitail | ||
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# For later, these are not available in 18.04 | ||
#browsh # text-based web browser, occasionally handy | ||
#dasel # json/yml/csv/etc data wrangling at the terminal | ||
#fzf # fuzzy file finder | ||
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## This section adds tools for desktop environment usage | ||
dbus-x11 | ||
xorg | ||
xubuntu-icon-theme | ||
xfce4 | ||
xfce4-goodies | ||
xclip | ||
xsel | ||
firefox | ||
chromium-browser | ||
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# GUI text editors | ||
vim-gtk3 | ||
gedit | ||
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# Git clients and tools | ||
git-gui | ||
gitg | ||
qgit | ||
meld | ||
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# For jupyter-tree-download. Ref: https://github.com/berkeley-dsep-infra/datahub/issues/3979 | ||
zip | ||
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# playwright deps https://jira-secure.berkeley.edu/browse/DH-305 | ||
libnss3 | ||
libnspr4 |
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name: ugr01-FA24 | ||
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channels: | ||
- conda-forge | ||
- pytorch | ||
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dependencies: | ||
- python==3.11.* | ||
- git==2.39.1 | ||
- jupyter-resource-usage==1.0.0 | ||
- jupyterlab==4.0.11 | ||
- jupyterlab-favorites==3.0.0 | ||
- jupyterlab_server==2.23.0 | ||
- jupyterlab_widgets==3.0.8 | ||
- jupyter_server==2.7.0 | ||
- nbgitpuller==1.2.1 | ||
- notebook==7.0.7 | ||
- folium==0.14.0 | ||
- h5netcdf==1.0.2 | ||
- ipywidgets==8.0.7 | ||
- jupysql==0.8.0 | ||
- jupyter-archive==3.4.0 | ||
- matplotlib==3.7.1 | ||
- mdit-py-plugins==0.4.0 | ||
- numpy==1.24.2 | ||
- pandas==2.0.2 | ||
- plotly==5.13.1 | ||
- requests==2.28.2 | ||
- scikit-image==0.19.3 | ||
- scikit-learn==1.2.2 | ||
- scipy==1.10.1 | ||
- seaborn==0.12.2 | ||
- statsmodels==0.14.0 | ||
- tensorflow-cpu==2.12.1 | ||
- sqlalchemy==2.0.16 | ||
- mlxtend==0.23.0 | ||
# Spring 2024 data 100 | ||
- pytorch==2.1.2 | ||
- cpuonly==2.0 | ||
- transformers==4.37.1 | ||
# Spring 2024 table demos | ||
- lxml==5.1.0 | ||
# Spring 2024 Econ 148 Packages | ||
- geopandas==0.14.2 | ||
- geopy==2.4.1 | ||
- lifelines==0.27.8 | ||
- pycountry==22.3.5 | ||
- pip | ||
- pip: | ||
# - -r infra-requirements.txt | ||
- ipywidgets==8.0.7 | ||
# disable until fixed (probably this: https://github.com/jupyterlab/jupyter-collaboration/issues/162) | ||
# - jupyter_collaboration==1.0.1 | ||
- jupyterhub==4.1.5 | ||
- nbconvert[webpdf] | ||
# - pyppeteer==2.0.0 | ||
- pytest-notebook==0.8.1 | ||
- gh-scoped-creds==4.1 | ||
- git+https://github.com/shaneknapp/python-popularity-contest.git@add-error-handling | ||
- ydata-profiling==4.6.4 | ||
- otter-grader==5.4.0 | ||
- duckdb==0.10.1 | ||
- duckdb_engine==0.11.2 |
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# WARNING: Original source at scripts/infra-packages/requirements.txt | ||
# PLEASE DO NOT EDIT ELSEWHERE | ||
# After editing scripts/infra-packages/requirements.txt, please run | ||
# scripts/infra-packages/sync.bash. | ||
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# This file pins versions of notebook related python packages we want | ||
# across all hubs. This makes sure we don't need to upgrade them | ||
# everwhere one by one. | ||
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# FIXME: Freeze this to get exact versions of all dependencies | ||
notebook==7.0.7 | ||
jupyterlab==4.0.11 | ||
nbgitpuller==1.2.1 | ||
jupyter-resource-usage==1.0.1 | ||
# Matches version in images/hub/Dockerfile | ||
jupyterhub==4.1.5 | ||
appmode==0.8.0 | ||
ipywidgets==8.0.7 | ||
jupyter-tree-download==1.0.1 | ||
git-credential-helpers==0.2 | ||
# Measure popularity of different packages in our hubs | ||
# https://discourse.jupyter.org/t/request-for-implementation-instrument-libraries-actively-used-by-users-on-a-jupyterhub/7994?u=yuvipanda | ||
git+https://github.com/shaneknapp/python-popularity-contest.git@add-error-handling | ||
# RISE is useful for presentations - see https://github.com/berkeley-dsep-infra/datahub/issues/2527 | ||
RISE==5.7.1 | ||
# syncthing for dropbox-like functionality | ||
jupyter-syncthing-proxy==1.0.3 | ||
# jupyter archival tool for easy user downloads | ||
jupyter-archive==3.4.0 |
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#!/usr/bin/env bash | ||
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# installing chromium browser to enable webpdf conversion using nbconvert | ||
export PLAYWRIGHT_BROWSERS_PATH=${CONDA_DIR} | ||
playwright install chromium |
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#!/bin/bash | ||
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# See https://jira-secure.berkeley.edu/browse/DH-305 | ||
export PLAYWRIGHT_BROWSERS_PATH=${CONDA_DIR} | ||
exec "$@" |